Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00041 and ECD_t00042 are separated by 44 nucleotides ECD_t00042 and ECD_t00043 are separated by 46 nucleotides ECD_t00043 and ECD_t00044 are separated by 4 nucleotides ECD_t00044 and ECD_02307 are separated by 119 nucleotides ECD_02307 and ECD_02308 overlap by 10 nucleotides ECD_02308 and ECD_02309 are separated by 89 nucleotides
ECD_t00041: ECD_t00041 - tRNA-Val, at 2,397,468 to 2,397,543
_t00041
ECD_t00042: ECD_t00042 - tRNA-Val, at 2,397,588 to 2,397,663
_t00042
ECD_t00043: ECD_t00043 - tRNA-Val, at 2,397,710 to 2,397,785
_t00043
ECD_t00044: ECD_t00044 - tRNA-Lys, at 2,397,790 to 2,397,865
_t00044
ECD_02307: ECD_02307 - hypothetical protein, at 2,397,985 to 2,398,326
_02307
ECD_02308: ECD_02308 - transcriptional regulator of yefH, at 2,398,317 to 2,399,243
_02308
ECD_02309: ECD_02309 - putative inorganic ion transporter, at 2,399,333 to 2,400,331
_02309
Position (kb)
2398
2399
2400 Strain fitness (log2 ratio)
-2
-1
0
1 at 2397.319 kb on - strand at 2397.324 kb on - strand at 2397.501 kb on + strand, within ECD_t00041 at 2397.546 kb on + strand at 2397.546 kb on + strand at 2397.551 kb on + strand at 2397.551 kb on + strand at 2397.551 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.555 kb on + strand at 2397.569 kb on + strand at 2397.677 kb on + strand at 2397.743 kb on + strand, within ECD_t00043 at 2397.957 kb on + strand at 2397.957 kb on + strand at 2397.965 kb on - strand at 2398.019 kb on + strand at 2398.036 kb on - strand, within ECD_02307 at 2398.134 kb on + strand, within ECD_02307 at 2398.318 kb on + strand at 2398.318 kb on + strand at 2398.318 kb on + strand at 2398.318 kb on + strand at 2398.321 kb on - strand at 2398.473 kb on + strand, within ECD_02308 at 2398.523 kb on + strand, within ECD_02308 at 2398.699 kb on + strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.880 kb on + strand, within ECD_02308 at 2398.881 kb on - strand, within ECD_02308 at 2399.306 kb on + strand at 2399.473 kb on + strand, within ECD_02309 at 2399.643 kb on - strand, within ECD_02309 at 2399.957 kb on + strand, within ECD_02309 at 2399.959 kb on + strand, within ECD_02309 at 2400.067 kb on - strand, within ECD_02309 at 2400.071 kb on - strand, within ECD_02309
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,397,319 - -0.2 2,397,324 - +0.9 2,397,501 + ECD_t00041 0.43 -0.4 2,397,546 + -0.1 2,397,546 + +0.4 2,397,551 + -0.3 2,397,551 + +0.3 2,397,551 + -0.1 2,397,555 + -0.5 2,397,555 + -0.4 2,397,555 + +0.5 2,397,555 + +0.1 2,397,555 + -1.0 2,397,569 + +0.6 2,397,677 + -0.2 2,397,743 + ECD_t00043 0.43 -0.5 2,397,957 + +0.6 2,397,957 + +0.2 2,397,965 - +1.1 2,398,019 + +0.7 2,398,036 - ECD_02307 0.15 +0.2 2,398,134 + ECD_02307 0.44 -0.5 2,398,318 + +0.6 2,398,318 + -0.1 2,398,318 + -0.3 2,398,318 + -0.6 2,398,321 - -0.1 2,398,473 + ECD_02308 0.17 -0.5 2,398,523 + ECD_02308 0.22 -0.2 2,398,699 + ECD_02308 0.41 +0.1 2,398,700 - ECD_02308 0.41 -0.4 2,398,700 - ECD_02308 0.41 +0.2 2,398,700 - ECD_02308 0.41 -0.1 2,398,880 + ECD_02308 0.61 -0.2 2,398,881 - ECD_02308 0.61 -1.2 2,399,306 + +0.7 2,399,473 + ECD_02309 0.14 -1.9 2,399,643 - ECD_02309 0.31 +0.0 2,399,957 + ECD_02309 0.62 +0.0 2,399,959 + ECD_02309 0.63 +0.2 2,400,067 - ECD_02309 0.73 +0.3 2,400,071 - ECD_02309 0.74 -2.3
Or see this region's nucleotide sequence