Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02296 and ECD_02297 are separated by 21 nucleotides ECD_02297 and ECD_02298 are separated by 218 nucleotides ECD_02298 and ECD_02299 are separated by 203 nucleotides
ECD_02296: ECD_02296 - putative enzyme IIC component of PTS, at 2,384,533 to 2,385,780
_02296
ECD_02297: ECD_02297 - putative enzyme IIB component of PTS, at 2,385,802 to 2,386,128
_02297
ECD_02298: ECD_02298 - glucokinase, at 2,386,347 to 2,387,312
_02298
ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772
_02299
Position (kb)
2386
2387
2388 Strain fitness (log2 ratio)
-2
-1
0
1 at 2385.505 kb on + strand, within ECD_02296 at 2385.540 kb on + strand, within ECD_02296 at 2385.541 kb on - strand, within ECD_02296 at 2385.586 kb on - strand, within ECD_02296 at 2385.586 kb on - strand, within ECD_02296 at 2385.632 kb on - strand, within ECD_02296 at 2385.804 kb on - strand at 2385.928 kb on - strand, within ECD_02297 at 2386.071 kb on + strand, within ECD_02297 at 2386.106 kb on - strand at 2386.106 kb on - strand at 2386.106 kb on - strand at 2386.204 kb on + strand at 2386.204 kb on + strand at 2386.204 kb on + strand at 2386.464 kb on - strand, within ECD_02298 at 2386.593 kb on - strand, within ECD_02298 at 2386.662 kb on - strand, within ECD_02298 at 2386.717 kb on + strand, within ECD_02298 at 2386.932 kb on - strand, within ECD_02298 at 2387.133 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.171 kb on - strand, within ECD_02298 at 2387.216 kb on - strand at 2387.296 kb on - strand at 2387.303 kb on - strand at 2387.303 kb on - strand at 2387.375 kb on - strand at 2387.485 kb on + strand at 2387.486 kb on - strand at 2387.486 kb on - strand at 2387.701 kb on - strand, within ECD_02299 at 2387.824 kb on + strand, within ECD_02299 at 2387.835 kb on + strand, within ECD_02299 at 2387.836 kb on - strand, within ECD_02299 at 2387.960 kb on - strand, within ECD_02299 at 2387.960 kb on - strand, within ECD_02299 at 2387.998 kb on + strand, within ECD_02299 at 2387.999 kb on - strand, within ECD_02299 at 2388.022 kb on - strand, within ECD_02299
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 2,385,505 + ECD_02296 0.78 +0.9 2,385,540 + ECD_02296 0.81 -1.3 2,385,541 - ECD_02296 0.81 -0.6 2,385,586 - ECD_02296 0.84 +0.2 2,385,586 - ECD_02296 0.84 +0.3 2,385,632 - ECD_02296 0.88 +0.8 2,385,804 - -0.6 2,385,928 - ECD_02297 0.39 +0.7 2,386,071 + ECD_02297 0.82 +0.1 2,386,106 - +0.6 2,386,106 - -0.3 2,386,106 - -0.2 2,386,204 + +0.4 2,386,204 + +0.7 2,386,204 + +0.5 2,386,464 - ECD_02298 0.12 -0.4 2,386,593 - ECD_02298 0.25 -0.9 2,386,662 - ECD_02298 0.33 -0.8 2,386,717 + ECD_02298 0.38 +1.1 2,386,932 - ECD_02298 0.61 -0.2 2,387,133 - ECD_02298 0.81 -0.9 2,387,157 - ECD_02298 0.84 -0.5 2,387,157 - ECD_02298 0.84 -0.7 2,387,157 - ECD_02298 0.84 -0.4 2,387,157 - ECD_02298 0.84 -0.8 2,387,171 - ECD_02298 0.85 +0.8 2,387,216 - -1.3 2,387,296 - +0.2 2,387,303 - -0.3 2,387,303 - -1.0 2,387,375 - +0.2 2,387,485 + +0.4 2,387,486 - -1.1 2,387,486 - +0.2 2,387,701 - ECD_02299 0.15 -0.5 2,387,824 + ECD_02299 0.25 +0.4 2,387,835 + ECD_02299 0.25 +0.5 2,387,836 - ECD_02299 0.25 -1.4 2,387,960 - ECD_02299 0.35 -1.8 2,387,960 - ECD_02299 0.35 -0.3 2,387,998 + ECD_02299 0.38 +1.4 2,387,999 - ECD_02299 0.38 +1.1 2,388,022 - ECD_02299 0.40 -0.2
Or see this region's nucleotide sequence