Strain Fitness in Escherichia coli BL21 around ECD_02298

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02296 and ECD_02297 are separated by 21 nucleotidesECD_02297 and ECD_02298 are separated by 218 nucleotidesECD_02298 and ECD_02299 are separated by 203 nucleotides ECD_02296: ECD_02296 - putative enzyme IIC component of PTS, at 2,384,533 to 2,385,780 _02296 ECD_02297: ECD_02297 - putative enzyme IIB component of PTS, at 2,385,802 to 2,386,128 _02297 ECD_02298: ECD_02298 - glucokinase, at 2,386,347 to 2,387,312 _02298 ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772 _02299 Position (kb) 2386 2387 2388Strain fitness (log2 ratio) -2 -1 0 1at 2385.505 kb on + strand, within ECD_02296at 2385.540 kb on + strand, within ECD_02296at 2385.541 kb on - strand, within ECD_02296at 2385.586 kb on - strand, within ECD_02296at 2385.586 kb on - strand, within ECD_02296at 2385.632 kb on - strand, within ECD_02296at 2385.804 kb on - strandat 2385.928 kb on - strand, within ECD_02297at 2386.071 kb on + strand, within ECD_02297at 2386.106 kb on - strandat 2386.106 kb on - strandat 2386.106 kb on - strandat 2386.204 kb on + strandat 2386.204 kb on + strandat 2386.204 kb on + strandat 2386.464 kb on - strand, within ECD_02298at 2386.593 kb on - strand, within ECD_02298at 2386.662 kb on - strand, within ECD_02298at 2386.717 kb on + strand, within ECD_02298at 2386.932 kb on - strand, within ECD_02298at 2387.133 kb on - strand, within ECD_02298at 2387.157 kb on - strand, within ECD_02298at 2387.157 kb on - strand, within ECD_02298at 2387.157 kb on - strand, within ECD_02298at 2387.157 kb on - strand, within ECD_02298at 2387.171 kb on - strand, within ECD_02298at 2387.216 kb on - strandat 2387.296 kb on - strandat 2387.303 kb on - strandat 2387.303 kb on - strandat 2387.375 kb on - strandat 2387.485 kb on + strandat 2387.486 kb on - strandat 2387.486 kb on - strandat 2387.701 kb on - strand, within ECD_02299at 2387.824 kb on + strand, within ECD_02299at 2387.835 kb on + strand, within ECD_02299at 2387.836 kb on - strand, within ECD_02299at 2387.960 kb on - strand, within ECD_02299at 2387.960 kb on - strand, within ECD_02299at 2387.998 kb on + strand, within ECD_02299at 2387.999 kb on - strand, within ECD_02299at 2388.022 kb on - strand, within ECD_02299

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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2,385,505 + ECD_02296 0.78 +0.9
2,385,540 + ECD_02296 0.81 -1.3
2,385,541 - ECD_02296 0.81 -0.6
2,385,586 - ECD_02296 0.84 +0.2
2,385,586 - ECD_02296 0.84 +0.3
2,385,632 - ECD_02296 0.88 +0.8
2,385,804 - -0.6
2,385,928 - ECD_02297 0.39 +0.7
2,386,071 + ECD_02297 0.82 +0.1
2,386,106 - +0.6
2,386,106 - -0.3
2,386,106 - -0.2
2,386,204 + +0.4
2,386,204 + +0.7
2,386,204 + +0.5
2,386,464 - ECD_02298 0.12 -0.4
2,386,593 - ECD_02298 0.25 -0.9
2,386,662 - ECD_02298 0.33 -0.8
2,386,717 + ECD_02298 0.38 +1.1
2,386,932 - ECD_02298 0.61 -0.2
2,387,133 - ECD_02298 0.81 -0.9
2,387,157 - ECD_02298 0.84 -0.5
2,387,157 - ECD_02298 0.84 -0.7
2,387,157 - ECD_02298 0.84 -0.4
2,387,157 - ECD_02298 0.84 -0.8
2,387,171 - ECD_02298 0.85 +0.8
2,387,216 - -1.3
2,387,296 - +0.2
2,387,303 - -0.3
2,387,303 - -1.0
2,387,375 - +0.2
2,387,485 + +0.4
2,387,486 - -1.1
2,387,486 - +0.2
2,387,701 - ECD_02299 0.15 -0.5
2,387,824 + ECD_02299 0.25 +0.4
2,387,835 + ECD_02299 0.25 +0.5
2,387,836 - ECD_02299 0.25 -1.4
2,387,960 - ECD_02299 0.35 -1.8
2,387,960 - ECD_02299 0.35 -0.3
2,387,998 + ECD_02299 0.38 +1.4
2,387,999 - ECD_02299 0.38 +1.1
2,388,022 - ECD_02299 0.40 -0.2

Or see this region's nucleotide sequence