Strain Fitness in Escherichia coli BL21 around ECD_02031

Experiment: Bas27

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02029 and ECD_02030 are separated by 51 nucleotidesECD_02030 and ECD_02031 are separated by 64 nucleotidesECD_02031 and ECD_02032 overlap by 4 nucleotides ECD_02029: ECD_02029 - putative DNA-binding transcriptional regulator, at 2,079,830 to 2,080,576 _02029 ECD_02030: ECD_02030 - putative family 25 glycosyl hydrolase, at 2,080,628 to 2,081,446 _02030 ECD_02031: ECD_02031 - hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase, at 2,081,511 to 2,082,311 _02031 ECD_02032: ECD_02032 - hydoxyethylthiazole kinase, at 2,082,308 to 2,083,096 _02032 Position (kb) 2081 2082 2083Strain fitness (log2 ratio) -1 0 1 2at 2080.685 kb on - strandat 2080.929 kb on - strand, within ECD_02030at 2081.055 kb on + strand, within ECD_02030at 2081.056 kb on - strand, within ECD_02030at 2081.094 kb on - strand, within ECD_02030at 2081.254 kb on - strand, within ECD_02030at 2081.313 kb on + strand, within ECD_02030at 2081.439 kb on - strandat 2081.498 kb on + strandat 2081.500 kb on + strandat 2081.503 kb on + strandat 2081.503 kb on + strandat 2081.673 kb on - strand, within ECD_02031at 2081.673 kb on - strand, within ECD_02031at 2082.155 kb on - strand, within ECD_02031at 2082.166 kb on - strand, within ECD_02031at 2082.201 kb on - strand, within ECD_02031at 2082.550 kb on + strand, within ECD_02032at 2082.551 kb on - strand, within ECD_02032at 2082.551 kb on - strand, within ECD_02032at 2082.571 kb on - strand, within ECD_02032at 2082.719 kb on - strand, within ECD_02032at 2083.097 kb on - strandat 2083.153 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
remove
2,080,685 - +0.2
2,080,929 - ECD_02030 0.37 +0.2
2,081,055 + ECD_02030 0.52 +0.4
2,081,056 - ECD_02030 0.52 -0.5
2,081,094 - ECD_02030 0.57 +0.2
2,081,254 - ECD_02030 0.76 -0.2
2,081,313 + ECD_02030 0.84 +0.2
2,081,439 - +0.8
2,081,498 + +0.4
2,081,500 + +0.3
2,081,503 + +0.3
2,081,503 + +0.2
2,081,673 - ECD_02031 0.20 +0.1
2,081,673 - ECD_02031 0.20 +0.5
2,082,155 - ECD_02031 0.80 +1.0
2,082,166 - ECD_02031 0.82 +0.2
2,082,201 - ECD_02031 0.86 +1.8
2,082,550 + ECD_02032 0.31 +0.4
2,082,551 - ECD_02032 0.31 -0.1
2,082,551 - ECD_02032 0.31 +0.1
2,082,571 - ECD_02032 0.33 +0.7
2,082,719 - ECD_02032 0.52 +0.5
2,083,097 - +1.5
2,083,153 - +0.7

Or see this region's nucleotide sequence