Strain Fitness in Escherichia coli BL21 around ECD_01894

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01893 and ECD_01894 are separated by 101 nucleotidesECD_01894 and ECD_01895 are separated by 342 nucleotides ECD_01893: ECD_01893 - shikimate transporter, at 1,958,790 to 1,960,106 _01893 ECD_01894: ECD_01894 - AMP nucleosidase, at 1,960,208 to 1,961,662 _01894 ECD_01895: ECD_01895 - UPF0082 family protein, at 1,962,005 to 1,962,721 _01895 Position (kb) 1960 1961 1962Strain fitness (log2 ratio) -1 0 1at 1959.409 kb on + strand, within ECD_01893at 1959.838 kb on + strand, within ECD_01893at 1959.922 kb on - strand, within ECD_01893at 1960.038 kb on + strandat 1960.038 kb on + strandat 1960.166 kb on + strandat 1960.167 kb on - strandat 1960.184 kb on - strandat 1960.213 kb on + strandat 1960.216 kb on + strandat 1960.510 kb on + strand, within ECD_01894at 1960.580 kb on + strand, within ECD_01894at 1960.580 kb on + strand, within ECD_01894at 1960.817 kb on - strand, within ECD_01894at 1960.832 kb on + strand, within ECD_01894at 1961.038 kb on + strand, within ECD_01894at 1961.177 kb on + strand, within ECD_01894at 1961.177 kb on + strand, within ECD_01894at 1961.475 kb on + strand, within ECD_01894at 1961.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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1,959,409 + ECD_01893 0.47 -0.2
1,959,838 + ECD_01893 0.80 +0.8
1,959,922 - ECD_01893 0.86 +0.1
1,960,038 + -0.9
1,960,038 + +0.3
1,960,166 + -0.1
1,960,167 - -1.1
1,960,184 - -0.4
1,960,213 + -0.1
1,960,216 + -0.2
1,960,510 + ECD_01894 0.21 -0.2
1,960,580 + ECD_01894 0.26 +0.1
1,960,580 + ECD_01894 0.26 +0.2
1,960,817 - ECD_01894 0.42 +1.3
1,960,832 + ECD_01894 0.43 +0.2
1,961,038 + ECD_01894 0.57 +1.5
1,961,177 + ECD_01894 0.67 +0.1
1,961,177 + ECD_01894 0.67 +0.9
1,961,475 + ECD_01894 0.87 -1.1
1,961,933 + -0.1

Or see this region's nucleotide sequence