Strain Fitness in Escherichia coli BL21 around ECD_01759

Experiment: Bas27

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01756 and ECD_01757 are separated by 0 nucleotidesECD_01757 and ECD_01758 are separated by 169 nucleotidesECD_01758 and ECD_01759 overlap by 44 nucleotidesECD_01759 and ECD_01760 are separated by 96 nucleotides ECD_01756: ECD_01756 - aminoacyl-tRNA editing domain protein, at 1,817,951 to 1,818,454 _01756 ECD_01757: ECD_01757 - uncharacterized protein, at 1,818,455 to 1,818,559 _01757 ECD_01758: ECD_01758 - UPF0756 family putative inner membrane protein, at 1,818,729 to 1,819,175 _01758 ECD_01759: ECD_01759 - putative DNA-binding transcriptional regulator, at 1,819,132 to 1,819,953 _01759 ECD_01760: ECD_01760 - putative MFS transporter, inner membrane protein, at 1,820,050 to 1,821,231 _01760 Position (kb) 1819 1820Strain fitness (log2 ratio) -1 0 1at 1818.456 kb on + strandat 1818.456 kb on + strandat 1818.457 kb on - strandat 1819.190 kb on + strandat 1819.325 kb on - strand, within ECD_01759at 1819.885 kb on - strandat 1820.004 kb on + strandat 1820.049 kb on + strandat 1820.050 kb on - strandat 1820.050 kb on - strandat 1820.354 kb on - strand, within ECD_01760at 1820.354 kb on - strand, within ECD_01760at 1820.361 kb on - strand, within ECD_01760at 1820.654 kb on + strand, within ECD_01760at 1820.659 kb on - strand, within ECD_01760

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas27
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1,818,456 + -0.7
1,818,456 + -1.7
1,818,457 - -1.3
1,819,190 + +0.0
1,819,325 - ECD_01759 0.23 -1.0
1,819,885 - +0.1
1,820,004 + -0.8
1,820,049 + -0.2
1,820,050 - -0.3
1,820,050 - +0.9
1,820,354 - ECD_01760 0.26 +0.4
1,820,354 - ECD_01760 0.26 -0.3
1,820,361 - ECD_01760 0.26 +1.4
1,820,654 + ECD_01760 0.51 +0.2
1,820,659 - ECD_01760 0.52 +0.5

Or see this region's nucleotide sequence