Experiment: Bas27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00375 and ECD_00376 are separated by 416 nucleotides ECD_00376 and ECD_00377 are separated by 55 nucleotides ECD_00377 and ECD_00378 overlap by 17 nucleotides
ECD_00375: ECD_00375 - putative transporter, at 410,703 to 412,067
_00375
ECD_00376: ECD_00376 - hypothetical protein, at 412,484 to 413,419
_00376
ECD_00377: ECD_00377 - putative acetyltransferase, at 413,475 to 414,017
_00377
ECD_00378: ECD_00378 - hypothetical protein, at 414,001 to 414,378
_00378
Position (kb) 412
413
414 Strain fitness (log2 ratio) -1
0
1 at 411.485 kb on + strand, within ECD_00375 at 411.485 kb on + strand, within ECD_00375 at 411.485 kb on + strand, within ECD_00375 at 411.489 kb on + strand, within ECD_00375 at 411.490 kb on - strand, within ECD_00375 at 411.490 kb on - strand, within ECD_00375 at 411.490 kb on - strand, within ECD_00375 at 411.500 kb on + strand, within ECD_00375 at 411.501 kb on - strand, within ECD_00375 at 411.501 kb on - strand, within ECD_00375 at 411.552 kb on - strand, within ECD_00375 at 411.738 kb on + strand, within ECD_00375 at 411.829 kb on - strand, within ECD_00375 at 411.898 kb on + strand, within ECD_00375 at 411.899 kb on - strand, within ECD_00375 at 411.921 kb on + strand, within ECD_00375 at 412.094 kb on + strand at 412.100 kb on - strand at 412.152 kb on + strand at 412.481 kb on + strand at 412.575 kb on + strand at 412.671 kb on - strand, within ECD_00376 at 412.782 kb on - strand, within ECD_00376 at 412.823 kb on + strand, within ECD_00376 at 412.830 kb on + strand, within ECD_00376 at 412.885 kb on + strand, within ECD_00376 at 412.885 kb on + strand, within ECD_00376 at 412.889 kb on + strand, within ECD_00376 at 412.905 kb on - strand, within ECD_00376 at 413.515 kb on - strand at 413.515 kb on - strand at 413.613 kb on - strand, within ECD_00377 at 413.840 kb on + strand, within ECD_00377 at 413.966 kb on - strand at 413.970 kb on - strand at 413.994 kb on - strand at 414.313 kb on + strand, within ECD_00378 at 414.329 kb on - strand, within ECD_00378 at 414.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas27 remove 411,485 + ECD_00375 0.57 +0.3 411,485 + ECD_00375 0.57 -0.2 411,485 + ECD_00375 0.57 +0.3 411,489 + ECD_00375 0.58 -0.2 411,490 - ECD_00375 0.58 +0.1 411,490 - ECD_00375 0.58 +0.1 411,490 - ECD_00375 0.58 -0.1 411,500 + ECD_00375 0.58 +0.3 411,501 - ECD_00375 0.58 +0.2 411,501 - ECD_00375 0.58 -0.4 411,552 - ECD_00375 0.62 +0.5 411,738 + ECD_00375 0.76 +1.4 411,829 - ECD_00375 0.82 +1.1 411,898 + ECD_00375 0.88 -1.0 411,899 - ECD_00375 0.88 -0.3 411,921 + ECD_00375 0.89 +1.3 412,094 + +1.2 412,100 - +0.1 412,152 + +0.0 412,481 + -0.2 412,575 + -0.3 412,671 - ECD_00376 0.20 +0.6 412,782 - ECD_00376 0.32 +0.5 412,823 + ECD_00376 0.36 +0.7 412,830 + ECD_00376 0.37 +1.4 412,885 + ECD_00376 0.43 +0.3 412,885 + ECD_00376 0.43 -0.0 412,889 + ECD_00376 0.43 +1.2 412,905 - ECD_00376 0.45 +0.1 413,515 - -0.0 413,515 - -0.0 413,613 - ECD_00377 0.25 -0.0 413,840 + ECD_00377 0.67 -1.0 413,966 - +0.1 413,970 - -0.2 413,994 - +0.0 414,313 + ECD_00378 0.83 +0.1 414,329 - ECD_00378 0.87 +0.4 414,368 - +0.2
Or see this region's nucleotide sequence