Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15185 and ABIE41_RS15190 are separated by 164 nucleotides ABIE41_RS15190 and ABIE41_RS15195 are separated by 237 nucleotides
ABIE41_RS15185: ABIE41_RS15185 - IMP dehydrogenase, at 3,106,579 to 3,108,072
_RS15185
ABIE41_RS15190: ABIE41_RS15190 - hypothetical protein, at 3,108,237 to 3,108,581
_RS15190
ABIE41_RS15195: ABIE41_RS15195 - MFS transporter, at 3,108,819 to 3,110,270
_RS15195
Position (kb)
3108
3109 Strain fitness (log2 ratio)
-2
-1
0
1 at 3107.589 kb on + strand, within ABIE41_RS15185 at 3107.589 kb on + strand, within ABIE41_RS15185 at 3108.175 kb on - strand at 3108.239 kb on - strand at 3108.239 kb on - strand at 3108.786 kb on - strand at 3108.966 kb on + strand, within ABIE41_RS15195 at 3108.966 kb on + strand, within ABIE41_RS15195 at 3108.967 kb on - strand, within ABIE41_RS15195 at 3108.967 kb on - strand, within ABIE41_RS15195 at 3109.218 kb on + strand, within ABIE41_RS15195 at 3109.218 kb on + strand, within ABIE41_RS15195 at 3109.219 kb on - strand, within ABIE41_RS15195 at 3109.219 kb on - strand, within ABIE41_RS15195 at 3109.219 kb on - strand, within ABIE41_RS15195 at 3109.285 kb on - strand, within ABIE41_RS15195 at 3109.285 kb on - strand, within ABIE41_RS15195 at 3109.285 kb on - strand, within ABIE41_RS15195 at 3109.285 kb on - strand, within ABIE41_RS15195 at 3109.285 kb on - strand, within ABIE41_RS15195 at 3109.491 kb on + strand, within ABIE41_RS15195 at 3109.491 kb on + strand, within ABIE41_RS15195 at 3109.491 kb on + strand, within ABIE41_RS15195 at 3109.491 kb on + strand, within ABIE41_RS15195 at 3109.491 kb on + strand, within ABIE41_RS15195 at 3109.491 kb on + strand, within ABIE41_RS15195 at 3109.492 kb on - strand, within ABIE41_RS15195 at 3109.492 kb on - strand, within ABIE41_RS15195
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 3,107,589 + ABIE41_RS15185 0.68 -2.3 3,107,589 + ABIE41_RS15185 0.68 -0.3 3,108,175 - -0.4 3,108,239 - -1.4 3,108,239 - -1.6 3,108,786 - -2.1 3,108,966 + ABIE41_RS15195 0.10 -0.1 3,108,966 + ABIE41_RS15195 0.10 +0.2 3,108,967 - ABIE41_RS15195 0.10 -0.1 3,108,967 - ABIE41_RS15195 0.10 +0.1 3,109,218 + ABIE41_RS15195 0.27 +0.2 3,109,218 + ABIE41_RS15195 0.27 -2.2 3,109,219 - ABIE41_RS15195 0.28 +0.3 3,109,219 - ABIE41_RS15195 0.28 -0.5 3,109,219 - ABIE41_RS15195 0.28 -0.0 3,109,285 - ABIE41_RS15195 0.32 +0.3 3,109,285 - ABIE41_RS15195 0.32 -0.5 3,109,285 - ABIE41_RS15195 0.32 +0.0 3,109,285 - ABIE41_RS15195 0.32 -0.8 3,109,285 - ABIE41_RS15195 0.32 +0.1 3,109,491 + ABIE41_RS15195 0.46 +0.1 3,109,491 + ABIE41_RS15195 0.46 -1.7 3,109,491 + ABIE41_RS15195 0.46 +0.0 3,109,491 + ABIE41_RS15195 0.46 +0.3 3,109,491 + ABIE41_RS15195 0.46 +0.1 3,109,491 + ABIE41_RS15195 0.46 -0.4 3,109,492 - ABIE41_RS15195 0.46 -0.5 3,109,492 - ABIE41_RS15195 0.46 +0.1
Or see this region's nucleotide sequence