Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08710

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08700 and ABIE41_RS08705 are separated by 48 nucleotidesABIE41_RS08705 and ABIE41_RS08710 are separated by 308 nucleotidesABIE41_RS08710 and ABIE41_RS08715 are separated by 7 nucleotidesABIE41_RS08715 and ABIE41_RS08720 are separated by 35 nucleotides ABIE41_RS08700: ABIE41_RS08700 - bifunctional diguanylate cyclase/phosphodiesterase, at 1,801,166 to 1,802,860 _RS08700 ABIE41_RS08705: ABIE41_RS08705 - polyhydroxyalkanoate synthesis repressor PhaR, at 1,802,909 to 1,803,505 _RS08705 ABIE41_RS08710: ABIE41_RS08710 - acetyl-CoA C-acetyltransferase, at 1,803,814 to 1,804,992 _RS08710 ABIE41_RS08715: ABIE41_RS08715 - DUF1737 domain-containing protein, at 1,805,000 to 1,805,215 _RS08715 ABIE41_RS08720: ABIE41_RS08720 - acetoacetyl-CoA reductase, at 1,805,251 to 1,805,973 _RS08720 Position (kb) 1803 1804 1805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1803.372 kb on + strand, within ABIE41_RS08705at 1803.372 kb on + strand, within ABIE41_RS08705at 1803.372 kb on + strand, within ABIE41_RS08705at 1803.429 kb on + strand, within ABIE41_RS08705at 1803.429 kb on + strand, within ABIE41_RS08705at 1803.451 kb on - strandat 1803.469 kb on - strandat 1804.280 kb on - strand, within ABIE41_RS08710at 1805.021 kb on + strandat 1805.021 kb on + strandat 1805.021 kb on + strandat 1805.022 kb on - strand, within ABIE41_RS08715at 1805.022 kb on - strand, within ABIE41_RS08715at 1805.027 kb on + strand, within ABIE41_RS08715at 1805.028 kb on - strand, within ABIE41_RS08715at 1805.099 kb on + strand, within ABIE41_RS08715at 1805.183 kb on + strand, within ABIE41_RS08715at 1805.184 kb on - strand, within ABIE41_RS08715at 1805.184 kb on - strand, within ABIE41_RS08715at 1805.213 kb on + strandat 1805.213 kb on + strandat 1805.213 kb on + strandat 1805.213 kb on + strandat 1805.348 kb on - strand, within ABIE41_RS08720at 1805.348 kb on - strand, within ABIE41_RS08720at 1805.426 kb on - strand, within ABIE41_RS08720at 1805.785 kb on + strand, within ABIE41_RS08720at 1805.785 kb on + strand, within ABIE41_RS08720at 1805.786 kb on - strand, within ABIE41_RS08720at 1805.786 kb on - strand, within ABIE41_RS08720at 1805.786 kb on - strand, within ABIE41_RS08720at 1805.787 kb on + strand, within ABIE41_RS08720at 1805.787 kb on + strand, within ABIE41_RS08720at 1805.962 kb on + strandat 1805.962 kb on + strandat 1805.962 kb on + strandat 1805.962 kb on + strandat 1805.962 kb on + strandat 1805.963 kb on - strandat 1805.963 kb on - strandat 1805.963 kb on - strandat 1805.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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1,803,372 + ABIE41_RS08705 0.78 -2.6
1,803,372 + ABIE41_RS08705 0.78 -2.9
1,803,372 + ABIE41_RS08705 0.78 -0.5
1,803,429 + ABIE41_RS08705 0.87 -0.7
1,803,429 + ABIE41_RS08705 0.87 -1.2
1,803,451 - -1.3
1,803,469 - -0.5
1,804,280 - ABIE41_RS08710 0.40 +0.3
1,805,021 + +1.1
1,805,021 + -0.0
1,805,021 + -0.5
1,805,022 - ABIE41_RS08715 0.10 +0.8
1,805,022 - ABIE41_RS08715 0.10 +0.4
1,805,027 + ABIE41_RS08715 0.12 -0.2
1,805,028 - ABIE41_RS08715 0.13 +0.1
1,805,099 + ABIE41_RS08715 0.46 -1.4
1,805,183 + ABIE41_RS08715 0.85 +0.3
1,805,184 - ABIE41_RS08715 0.85 +0.8
1,805,184 - ABIE41_RS08715 0.85 -0.9
1,805,213 + +2.4
1,805,213 + +0.3
1,805,213 + +0.7
1,805,213 + -0.7
1,805,348 - ABIE41_RS08720 0.13 -0.6
1,805,348 - ABIE41_RS08720 0.13 -1.3
1,805,426 - ABIE41_RS08720 0.24 -0.4
1,805,785 + ABIE41_RS08720 0.74 -3.0
1,805,785 + ABIE41_RS08720 0.74 -0.2
1,805,786 - ABIE41_RS08720 0.74 -1.2
1,805,786 - ABIE41_RS08720 0.74 -0.1
1,805,786 - ABIE41_RS08720 0.74 -0.7
1,805,787 + ABIE41_RS08720 0.74 +0.8
1,805,787 + ABIE41_RS08720 0.74 -0.3
1,805,962 + +0.9
1,805,962 + -0.6
1,805,962 + +2.0
1,805,962 + +0.8
1,805,962 + -0.3
1,805,963 - -0.2
1,805,963 - -0.3
1,805,963 - -0.3
1,805,963 - +0.5

Or see this region's nucleotide sequence