Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02730 and ABIE41_RS02735 are separated by 129 nucleotides ABIE41_RS02735 and ABIE41_RS02740 are separated by 75 nucleotides ABIE41_RS02740 and ABIE41_RS02745 are separated by 297 nucleotides
ABIE41_RS02730: ABIE41_RS02730 - DUF1345 domain-containing protein, at 559,491 to 560,147
_RS02730
ABIE41_RS02735: ABIE41_RS02735 - thioredoxin, at 560,277 to 560,597
_RS02735
ABIE41_RS02740: ABIE41_RS02740 - DoxX family protein, at 560,673 to 561,068
_RS02740
ABIE41_RS02745: ABIE41_RS02745 - PBP1A family penicillin-binding protein, at 561,366 to 563,513
_RS02745
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 559.893 kb on + strand, within ABIE41_RS02730 at 559.893 kb on + strand, within ABIE41_RS02730 at 559.894 kb on - strand, within ABIE41_RS02730 at 559.894 kb on - strand, within ABIE41_RS02730 at 559.894 kb on - strand, within ABIE41_RS02730 at 559.894 kb on - strand, within ABIE41_RS02730 at 559.905 kb on + strand, within ABIE41_RS02730 at 559.906 kb on - strand, within ABIE41_RS02730 at 559.906 kb on - strand, within ABIE41_RS02730 at 559.909 kb on - strand, within ABIE41_RS02730 at 559.909 kb on - strand, within ABIE41_RS02730 at 559.962 kb on + strand, within ABIE41_RS02730 at 559.962 kb on + strand, within ABIE41_RS02730 at 559.963 kb on - strand, within ABIE41_RS02730 at 559.963 kb on - strand, within ABIE41_RS02730 at 559.978 kb on - strand, within ABIE41_RS02730 at 559.978 kb on - strand, within ABIE41_RS02730 at 560.020 kb on + strand, within ABIE41_RS02730 at 560.021 kb on - strand, within ABIE41_RS02730 at 560.021 kb on - strand, within ABIE41_RS02730 at 560.021 kb on - strand, within ABIE41_RS02730 at 560.021 kb on - strand, within ABIE41_RS02730 at 560.220 kb on + strand at 560.220 kb on + strand at 560.220 kb on + strand at 560.220 kb on + strand at 560.671 kb on + strand at 560.672 kb on - strand at 560.731 kb on + strand, within ABIE41_RS02740 at 560.732 kb on - strand, within ABIE41_RS02740 at 560.785 kb on + strand, within ABIE41_RS02740 at 560.785 kb on + strand, within ABIE41_RS02740 at 560.786 kb on - strand, within ABIE41_RS02740 at 560.786 kb on - strand, within ABIE41_RS02740 at 560.816 kb on - strand, within ABIE41_RS02740 at 561.038 kb on - strand at 561.038 kb on - strand at 561.038 kb on - strand at 561.229 kb on - strand at 561.229 kb on - strand at 561.229 kb on - strand at 561.229 kb on - strand at 561.235 kb on - strand at 561.278 kb on + strand at 561.278 kb on + strand at 561.279 kb on - strand at 561.289 kb on + strand at 561.600 kb on + strand, within ABIE41_RS02745 at 561.601 kb on - strand, within ABIE41_RS02745 at 561.657 kb on + strand, within ABIE41_RS02745 at 561.804 kb on + strand, within ABIE41_RS02745 at 561.846 kb on + strand, within ABIE41_RS02745 at 561.847 kb on - strand, within ABIE41_RS02745 at 562.035 kb on + strand, within ABIE41_RS02745 at 562.036 kb on - strand, within ABIE41_RS02745 at 562.036 kb on - strand, within ABIE41_RS02745 at 562.036 kb on - strand, within ABIE41_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 559,893 + ABIE41_RS02730 0.61 -0.2 559,893 + ABIE41_RS02730 0.61 -1.8 559,894 - ABIE41_RS02730 0.61 +0.6 559,894 - ABIE41_RS02730 0.61 +0.7 559,894 - ABIE41_RS02730 0.61 -1.1 559,894 - ABIE41_RS02730 0.61 +1.5 559,905 + ABIE41_RS02730 0.63 -0.0 559,906 - ABIE41_RS02730 0.63 -0.9 559,906 - ABIE41_RS02730 0.63 +1.1 559,909 - ABIE41_RS02730 0.64 +0.5 559,909 - ABIE41_RS02730 0.64 +0.1 559,962 + ABIE41_RS02730 0.72 -0.7 559,962 + ABIE41_RS02730 0.72 -0.3 559,963 - ABIE41_RS02730 0.72 +0.1 559,963 - ABIE41_RS02730 0.72 -0.0 559,978 - ABIE41_RS02730 0.74 -0.6 559,978 - ABIE41_RS02730 0.74 -0.3 560,020 + ABIE41_RS02730 0.81 -0.2 560,021 - ABIE41_RS02730 0.81 -0.3 560,021 - ABIE41_RS02730 0.81 +0.4 560,021 - ABIE41_RS02730 0.81 -0.1 560,021 - ABIE41_RS02730 0.81 +0.7 560,220 + +0.7 560,220 + +0.7 560,220 + -0.8 560,220 + +0.4 560,671 + -1.0 560,672 - -0.4 560,731 + ABIE41_RS02740 0.15 -0.2 560,732 - ABIE41_RS02740 0.15 +2.2 560,785 + ABIE41_RS02740 0.28 +1.9 560,785 + ABIE41_RS02740 0.28 -0.6 560,786 - ABIE41_RS02740 0.29 +1.5 560,786 - ABIE41_RS02740 0.29 +1.3 560,816 - ABIE41_RS02740 0.36 -0.2 561,038 - -0.1 561,038 - -0.7 561,038 - -1.1 561,229 - -1.7 561,229 - -0.3 561,229 - +2.1 561,229 - +0.8 561,235 - -0.2 561,278 + +1.2 561,278 + +0.0 561,279 - -1.3 561,289 + +0.4 561,600 + ABIE41_RS02745 0.11 -0.0 561,601 - ABIE41_RS02745 0.11 -0.1 561,657 + ABIE41_RS02745 0.14 -0.6 561,804 + ABIE41_RS02745 0.20 +1.5 561,846 + ABIE41_RS02745 0.22 -0.8 561,847 - ABIE41_RS02745 0.22 -0.9 562,035 + ABIE41_RS02745 0.31 -0.5 562,036 - ABIE41_RS02745 0.31 -1.3 562,036 - ABIE41_RS02745 0.31 -0.2 562,036 - ABIE41_RS02745 0.31 -0.5
Or see this region's nucleotide sequence