Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01145 and ABIE41_RS01150 overlap by 4 nucleotides ABIE41_RS01150 and ABIE41_RS01155 are separated by 26 nucleotides ABIE41_RS01155 and ABIE41_RS01160 are separated by 390 nucleotides
ABIE41_RS01145: ABIE41_RS01145 - ATP-binding protein, at 218,762 to 220,387
_RS01145
ABIE41_RS01150: ABIE41_RS01150 - response regulator transcription factor, at 220,384 to 221,085
_RS01150
ABIE41_RS01155: ABIE41_RS01155 - hypothetical protein, at 221,112 to 221,675
_RS01155
ABIE41_RS01160: ABIE41_RS01160 - PAS domain-containing protein, at 222,066 to 223,595
_RS01160
Position (kb) 221
222 Strain fitness (log2 ratio) -1
0
1
2
3 at 220.196 kb on + strand, within ABIE41_RS01145 at 220.197 kb on - strand, within ABIE41_RS01145 at 220.197 kb on - strand, within ABIE41_RS01145 at 220.197 kb on - strand, within ABIE41_RS01145 at 220.197 kb on - strand, within ABIE41_RS01145 at 220.456 kb on + strand, within ABIE41_RS01150 at 220.457 kb on - strand, within ABIE41_RS01150 at 220.457 kb on - strand, within ABIE41_RS01150 at 220.699 kb on + strand, within ABIE41_RS01150 at 220.699 kb on + strand, within ABIE41_RS01150 at 220.699 kb on + strand, within ABIE41_RS01150 at 220.699 kb on + strand, within ABIE41_RS01150 at 220.700 kb on - strand, within ABIE41_RS01150 at 220.700 kb on - strand, within ABIE41_RS01150 at 220.700 kb on - strand, within ABIE41_RS01150 at 220.993 kb on + strand, within ABIE41_RS01150 at 220.993 kb on + strand, within ABIE41_RS01150 at 220.993 kb on + strand, within ABIE41_RS01150 at 220.993 kb on + strand, within ABIE41_RS01150 at 220.994 kb on - strand, within ABIE41_RS01150 at 220.994 kb on - strand, within ABIE41_RS01150 at 220.994 kb on - strand, within ABIE41_RS01150 at 221.123 kb on + strand at 221.123 kb on + strand at 221.124 kb on - strand at 221.124 kb on - strand at 221.125 kb on + strand at 221.125 kb on + strand at 221.126 kb on - strand at 221.126 kb on - strand at 221.126 kb on - strand at 221.362 kb on + strand, within ABIE41_RS01155 at 221.452 kb on + strand, within ABIE41_RS01155 at 221.452 kb on + strand, within ABIE41_RS01155 at 221.452 kb on + strand, within ABIE41_RS01155 at 221.452 kb on + strand, within ABIE41_RS01155 at 221.622 kb on + strand at 221.622 kb on + strand at 221.623 kb on - strand at 221.623 kb on - strand at 222.243 kb on + strand, within ABIE41_RS01160 at 222.244 kb on - strand, within ABIE41_RS01160 at 222.245 kb on + strand, within ABIE41_RS01160 at 222.246 kb on - strand, within ABIE41_RS01160 at 222.311 kb on + strand, within ABIE41_RS01160 at 222.447 kb on + strand, within ABIE41_RS01160 at 222.447 kb on + strand, within ABIE41_RS01160 at 222.448 kb on - strand, within ABIE41_RS01160 at 222.448 kb on - strand, within ABIE41_RS01160 at 222.632 kb on + strand, within ABIE41_RS01160 at 222.632 kb on + strand, within ABIE41_RS01160 at 222.632 kb on + strand, within ABIE41_RS01160 at 222.633 kb on - strand, within ABIE41_RS01160
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 220,196 + ABIE41_RS01145 0.88 -0.7 220,197 - ABIE41_RS01145 0.88 -1.3 220,197 - ABIE41_RS01145 0.88 -0.1 220,197 - ABIE41_RS01145 0.88 -0.2 220,197 - ABIE41_RS01145 0.88 +0.4 220,456 + ABIE41_RS01150 0.10 +0.1 220,457 - ABIE41_RS01150 0.10 -0.3 220,457 - ABIE41_RS01150 0.10 +0.2 220,699 + ABIE41_RS01150 0.45 -0.5 220,699 + ABIE41_RS01150 0.45 +0.6 220,699 + ABIE41_RS01150 0.45 +0.3 220,699 + ABIE41_RS01150 0.45 +1.4 220,700 - ABIE41_RS01150 0.45 +1.1 220,700 - ABIE41_RS01150 0.45 +0.7 220,700 - ABIE41_RS01150 0.45 +0.9 220,993 + ABIE41_RS01150 0.87 +0.1 220,993 + ABIE41_RS01150 0.87 +0.1 220,993 + ABIE41_RS01150 0.87 -0.2 220,993 + ABIE41_RS01150 0.87 -0.1 220,994 - ABIE41_RS01150 0.87 -0.6 220,994 - ABIE41_RS01150 0.87 -0.3 220,994 - ABIE41_RS01150 0.87 -0.8 221,123 + +0.3 221,123 + +0.3 221,124 - -0.0 221,124 - -0.2 221,125 + -0.3 221,125 + +0.2 221,126 - -0.0 221,126 - +0.2 221,126 - -1.0 221,362 + ABIE41_RS01155 0.44 +0.8 221,452 + ABIE41_RS01155 0.60 -0.3 221,452 + ABIE41_RS01155 0.60 +0.1 221,452 + ABIE41_RS01155 0.60 -1.3 221,452 + ABIE41_RS01155 0.60 +2.7 221,622 + +0.0 221,622 + -0.4 221,623 - +1.6 221,623 - +0.8 222,243 + ABIE41_RS01160 0.12 +0.7 222,244 - ABIE41_RS01160 0.12 -0.2 222,245 + ABIE41_RS01160 0.12 -1.2 222,246 - ABIE41_RS01160 0.12 -0.5 222,311 + ABIE41_RS01160 0.16 +0.2 222,447 + ABIE41_RS01160 0.25 -0.0 222,447 + ABIE41_RS01160 0.25 -0.6 222,448 - ABIE41_RS01160 0.25 -0.6 222,448 - ABIE41_RS01160 0.25 +1.4 222,632 + ABIE41_RS01160 0.37 +2.6 222,632 + ABIE41_RS01160 0.37 +3.0 222,632 + ABIE41_RS01160 0.37 -0.5 222,633 - ABIE41_RS01160 0.37 +3.4
Or see this region's nucleotide sequence