Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03769 and ECD_03770 are separated by 98 nucleotides ECD_03770 and ECD_03771 overlap by 7 nucleotides ECD_03771 and ECD_03772 overlap by 4 nucleotides ECD_03772 and ECD_03773 overlap by 4 nucleotides
ECD_03769: ECD_03769 - putative transcriptional regulator for sulfoquinovose utilization, at 3,981,256 to 3,982,041
_03769
ECD_03770: ECD_03770 - alpha-D-glucose-1-phosphate phosphatase, anomer-specific, at 3,982,140 to 3,982,739
_03770
ECD_03771: ECD_03771 - BrkB family putative transporter, inner membrane protein, at 3,982,733 to 3,983,605
_03771
ECD_03772: ECD_03772 - D-tyr-tRNA(Tyr) deacylase, at 3,983,602 to 3,984,039
_03772
ECD_03773: ECD_03773 - GNAT family putative N-acetyltransferase, at 3,984,036 to 3,985,025
_03773
Position (kb)
3982
3983
3984 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3981.769 kb on + strand, within ECD_03769 at 3981.776 kb on + strand, within ECD_03769 at 3981.777 kb on - strand, within ECD_03769 at 3981.837 kb on + strand, within ECD_03769 at 3981.897 kb on + strand, within ECD_03769 at 3981.898 kb on - strand, within ECD_03769 at 3981.898 kb on - strand, within ECD_03769 at 3981.898 kb on - strand, within ECD_03769 at 3981.898 kb on - strand, within ECD_03769 at 3981.901 kb on + strand, within ECD_03769 at 3981.901 kb on + strand, within ECD_03769 at 3981.901 kb on + strand, within ECD_03769 at 3981.901 kb on + strand, within ECD_03769 at 3981.901 kb on + strand, within ECD_03769 at 3981.902 kb on - strand, within ECD_03769 at 3981.902 kb on - strand, within ECD_03769 at 3981.902 kb on - strand, within ECD_03769 at 3981.902 kb on - strand, within ECD_03769 at 3981.995 kb on + strand at 3982.070 kb on - strand at 3982.070 kb on - strand at 3982.070 kb on - strand at 3982.081 kb on + strand at 3982.081 kb on + strand at 3982.081 kb on + strand at 3982.082 kb on - strand at 3982.111 kb on - strand at 3982.146 kb on + strand at 3982.147 kb on - strand at 3982.147 kb on - strand at 3982.149 kb on - strand at 3982.149 kb on - strand at 3982.160 kb on - strand at 3982.216 kb on + strand, within ECD_03770 at 3982.242 kb on - strand, within ECD_03770 at 3982.350 kb on + strand, within ECD_03770 at 3982.350 kb on + strand, within ECD_03770 at 3982.350 kb on + strand, within ECD_03770 at 3982.351 kb on - strand, within ECD_03770 at 3982.421 kb on + strand, within ECD_03770 at 3982.421 kb on + strand, within ECD_03770 at 3982.422 kb on - strand, within ECD_03770 at 3982.422 kb on - strand, within ECD_03770 at 3982.478 kb on + strand, within ECD_03770 at 3982.529 kb on + strand, within ECD_03770 at 3982.529 kb on + strand, within ECD_03770 at 3982.529 kb on + strand, within ECD_03770 at 3982.529 kb on + strand, within ECD_03770 at 3982.530 kb on - strand, within ECD_03770 at 3982.530 kb on - strand, within ECD_03770 at 3982.533 kb on + strand, within ECD_03770 at 3982.533 kb on + strand, within ECD_03770 at 3982.533 kb on + strand, within ECD_03770 at 3982.533 kb on + strand, within ECD_03770 at 3982.533 kb on + strand, within ECD_03770 at 3982.534 kb on - strand, within ECD_03770 at 3982.534 kb on - strand, within ECD_03770 at 3982.534 kb on - strand, within ECD_03770 at 3982.534 kb on - strand, within ECD_03770 at 3982.534 kb on - strand, within ECD_03770 at 3982.619 kb on + strand, within ECD_03770 at 3982.619 kb on + strand, within ECD_03770 at 3982.649 kb on + strand, within ECD_03770 at 3982.650 kb on - strand, within ECD_03770 at 3982.650 kb on - strand, within ECD_03770 at 3982.651 kb on + strand, within ECD_03770 at 3982.651 kb on + strand, within ECD_03770 at 3982.651 kb on + strand, within ECD_03770 at 3982.651 kb on + strand, within ECD_03770 at 3982.651 kb on + strand, within ECD_03770 at 3982.652 kb on - strand, within ECD_03770 at 3982.652 kb on - strand, within ECD_03770 at 3982.652 kb on - strand, within ECD_03770 at 3982.682 kb on + strand at 3982.683 kb on - strand at 3982.732 kb on + strand at 3982.732 kb on + strand at 3982.737 kb on + strand at 3982.853 kb on + strand, within ECD_03771 at 3982.853 kb on + strand, within ECD_03771 at 3982.854 kb on - strand, within ECD_03771 at 3982.944 kb on + strand, within ECD_03771 at 3982.978 kb on + strand, within ECD_03771 at 3982.990 kb on + strand, within ECD_03771 at 3982.990 kb on + strand, within ECD_03771 at 3982.991 kb on - strand, within ECD_03771 at 3982.991 kb on - strand, within ECD_03771 at 3983.000 kb on + strand, within ECD_03771 at 3983.002 kb on + strand, within ECD_03771 at 3983.085 kb on - strand, within ECD_03771 at 3983.085 kb on - strand, within ECD_03771 at 3983.108 kb on - strand, within ECD_03771 at 3983.122 kb on + strand, within ECD_03771 at 3983.122 kb on + strand, within ECD_03771 at 3983.160 kb on - strand, within ECD_03771 at 3983.172 kb on + strand, within ECD_03771 at 3983.219 kb on + strand, within ECD_03771 at 3983.254 kb on + strand, within ECD_03771 at 3983.322 kb on - strand, within ECD_03771 at 3983.322 kb on - strand, within ECD_03771 at 3983.335 kb on + strand, within ECD_03771 at 3983.423 kb on + strand, within ECD_03771 at 3983.423 kb on + strand, within ECD_03771 at 3983.423 kb on + strand, within ECD_03771 at 3983.456 kb on + strand, within ECD_03771 at 3983.498 kb on + strand, within ECD_03771 at 3983.499 kb on - strand, within ECD_03771 at 3983.512 kb on + strand, within ECD_03771 at 3983.512 kb on + strand, within ECD_03771 at 3983.513 kb on - strand, within ECD_03771 at 3983.513 kb on - strand, within ECD_03771 at 3983.536 kb on + strand at 3983.536 kb on + strand at 3983.537 kb on - strand at 3983.612 kb on + strand at 3983.915 kb on + strand, within ECD_03772 at 3983.916 kb on - strand, within ECD_03772 at 3983.916 kb on - strand, within ECD_03772 at 3983.916 kb on - strand, within ECD_03772 at 3983.917 kb on + strand, within ECD_03772 at 3983.917 kb on + strand, within ECD_03772 at 3983.917 kb on + strand, within ECD_03772 at 3983.917 kb on + strand, within ECD_03772 at 3983.917 kb on + strand, within ECD_03772 at 3983.917 kb on + strand, within ECD_03772 at 3983.918 kb on - strand, within ECD_03772 at 3983.918 kb on - strand, within ECD_03772 at 3983.918 kb on - strand, within ECD_03772 at 3983.918 kb on - strand, within ECD_03772 at 3983.918 kb on - strand, within ECD_03772 at 3983.918 kb on - strand, within ECD_03772 at 3983.923 kb on + strand, within ECD_03772 at 3983.923 kb on + strand, within ECD_03772 at 3983.924 kb on - strand, within ECD_03772 at 3983.993 kb on + strand, within ECD_03772 at 3984.035 kb on + strand at 3984.036 kb on - strand at 3984.036 kb on - strand at 3984.083 kb on + strand at 3984.083 kb on + strand at 3984.084 kb on - strand at 3984.084 kb on - strand at 3984.084 kb on - strand at 3984.087 kb on + strand at 3984.087 kb on + strand at 3984.088 kb on - strand at 3984.088 kb on - strand at 3984.088 kb on - strand at 3984.088 kb on - strand at 3984.129 kb on + strand at 3984.129 kb on + strand at 3984.129 kb on + strand at 3984.129 kb on + strand at 3984.132 kb on + strand at 3984.267 kb on + strand, within ECD_03773 at 3984.267 kb on + strand, within ECD_03773 at 3984.267 kb on + strand, within ECD_03773 at 3984.267 kb on + strand, within ECD_03773 at 3984.268 kb on - strand, within ECD_03773 at 3984.268 kb on - strand, within ECD_03773 at 3984.268 kb on - strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.269 kb on + strand, within ECD_03773 at 3984.270 kb on - strand, within ECD_03773 at 3984.270 kb on - strand, within ECD_03773 at 3984.270 kb on - strand, within ECD_03773 at 3984.270 kb on - strand, within ECD_03773 at 3984.272 kb on + strand, within ECD_03773 at 3984.509 kb on + strand, within ECD_03773 at 3984.510 kb on - strand, within ECD_03773 at 3984.510 kb on - strand, within ECD_03773 at 3984.510 kb on - strand, within ECD_03773
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,981,769 + ECD_03769 0.65 +0.7 3,981,776 + ECD_03769 0.66 +0.6 3,981,777 - ECD_03769 0.66 -0.7 3,981,837 + ECD_03769 0.74 +0.0 3,981,897 + ECD_03769 0.82 +0.6 3,981,898 - ECD_03769 0.82 +0.1 3,981,898 - ECD_03769 0.82 +0.1 3,981,898 - ECD_03769 0.82 +1.1 3,981,898 - ECD_03769 0.82 +0.2 3,981,901 + ECD_03769 0.82 +1.7 3,981,901 + ECD_03769 0.82 +0.7 3,981,901 + ECD_03769 0.82 +0.1 3,981,901 + ECD_03769 0.82 +0.2 3,981,901 + ECD_03769 0.82 +0.3 3,981,902 - ECD_03769 0.82 +0.8 3,981,902 - ECD_03769 0.82 +0.2 3,981,902 - ECD_03769 0.82 -1.7 3,981,902 - ECD_03769 0.82 -1.7 3,981,995 + +0.1 3,982,070 - -0.1 3,982,070 - -1.1 3,982,070 - +0.5 3,982,081 + -0.5 3,982,081 + +0.8 3,982,081 + +0.3 3,982,082 - +1.4 3,982,111 - -0.4 3,982,146 + -0.5 3,982,147 - +0.4 3,982,147 - +0.9 3,982,149 - +0.0 3,982,149 - -0.9 3,982,160 - +0.5 3,982,216 + ECD_03770 0.13 -0.6 3,982,242 - ECD_03770 0.17 -1.2 3,982,350 + ECD_03770 0.35 -0.2 3,982,350 + ECD_03770 0.35 +0.5 3,982,350 + ECD_03770 0.35 +0.7 3,982,351 - ECD_03770 0.35 -0.1 3,982,421 + ECD_03770 0.47 -0.7 3,982,421 + ECD_03770 0.47 +0.8 3,982,422 - ECD_03770 0.47 +0.0 3,982,422 - ECD_03770 0.47 +0.4 3,982,478 + ECD_03770 0.56 +2.1 3,982,529 + ECD_03770 0.65 -1.0 3,982,529 + ECD_03770 0.65 +1.3 3,982,529 + ECD_03770 0.65 -0.3 3,982,529 + ECD_03770 0.65 +0.2 3,982,530 - ECD_03770 0.65 +0.3 3,982,530 - ECD_03770 0.65 -0.3 3,982,533 + ECD_03770 0.66 +1.1 3,982,533 + ECD_03770 0.66 -0.2 3,982,533 + ECD_03770 0.66 +0.8 3,982,533 + ECD_03770 0.66 -0.1 3,982,533 + ECD_03770 0.66 -0.0 3,982,534 - ECD_03770 0.66 +0.2 3,982,534 - ECD_03770 0.66 -0.3 3,982,534 - ECD_03770 0.66 -0.9 3,982,534 - ECD_03770 0.66 -0.6 3,982,534 - ECD_03770 0.66 +0.4 3,982,619 + ECD_03770 0.80 -1.7 3,982,619 + ECD_03770 0.80 +0.1 3,982,649 + ECD_03770 0.85 +1.1 3,982,650 - ECD_03770 0.85 +0.1 3,982,650 - ECD_03770 0.85 -1.5 3,982,651 + ECD_03770 0.85 -0.5 3,982,651 + ECD_03770 0.85 -0.5 3,982,651 + ECD_03770 0.85 -0.1 3,982,651 + ECD_03770 0.85 -0.4 3,982,651 + ECD_03770 0.85 -0.2 3,982,652 - ECD_03770 0.85 +0.2 3,982,652 - ECD_03770 0.85 +0.1 3,982,652 - ECD_03770 0.85 +0.8 3,982,682 + +0.5 3,982,683 - +0.0 3,982,732 + +0.4 3,982,732 + -0.0 3,982,737 + +0.4 3,982,853 + ECD_03771 0.14 +0.6 3,982,853 + ECD_03771 0.14 +1.4 3,982,854 - ECD_03771 0.14 +0.9 3,982,944 + ECD_03771 0.24 +0.1 3,982,978 + ECD_03771 0.28 +0.7 3,982,990 + ECD_03771 0.29 -0.9 3,982,990 + ECD_03771 0.29 +0.5 3,982,991 - ECD_03771 0.30 -0.1 3,982,991 - ECD_03771 0.30 +0.3 3,983,000 + ECD_03771 0.31 +0.2 3,983,002 + ECD_03771 0.31 +0.4 3,983,085 - ECD_03771 0.40 -1.7 3,983,085 - ECD_03771 0.40 -0.7 3,983,108 - ECD_03771 0.43 -0.1 3,983,122 + ECD_03771 0.45 +0.7 3,983,122 + ECD_03771 0.45 -0.8 3,983,160 - ECD_03771 0.49 -1.3 3,983,172 + ECD_03771 0.50 -1.2 3,983,219 + ECD_03771 0.56 +0.4 3,983,254 + ECD_03771 0.60 +0.3 3,983,322 - ECD_03771 0.67 -0.6 3,983,322 - ECD_03771 0.67 -0.1 3,983,335 + ECD_03771 0.69 +0.5 3,983,423 + ECD_03771 0.79 +0.5 3,983,423 + ECD_03771 0.79 -1.1 3,983,423 + ECD_03771 0.79 +0.5 3,983,456 + ECD_03771 0.83 +1.1 3,983,498 + ECD_03771 0.88 +0.1 3,983,499 - ECD_03771 0.88 +0.2 3,983,512 + ECD_03771 0.89 +0.7 3,983,512 + ECD_03771 0.89 -0.9 3,983,513 - ECD_03771 0.89 -0.2 3,983,513 - ECD_03771 0.89 +0.7 3,983,536 + +1.1 3,983,536 + -0.8 3,983,537 - +0.9 3,983,612 + +0.8 3,983,915 + ECD_03772 0.71 +0.7 3,983,916 - ECD_03772 0.72 +0.7 3,983,916 - ECD_03772 0.72 -0.6 3,983,916 - ECD_03772 0.72 +0.3 3,983,917 + ECD_03772 0.72 +0.2 3,983,917 + ECD_03772 0.72 -0.4 3,983,917 + ECD_03772 0.72 +0.0 3,983,917 + ECD_03772 0.72 -0.2 3,983,917 + ECD_03772 0.72 -0.1 3,983,917 + ECD_03772 0.72 -0.9 3,983,918 - ECD_03772 0.72 +0.2 3,983,918 - ECD_03772 0.72 -1.7 3,983,918 - ECD_03772 0.72 -0.7 3,983,918 - ECD_03772 0.72 -0.0 3,983,918 - ECD_03772 0.72 +0.0 3,983,918 - ECD_03772 0.72 +1.1 3,983,923 + ECD_03772 0.73 -0.1 3,983,923 + ECD_03772 0.73 +0.0 3,983,924 - ECD_03772 0.74 +1.7 3,983,993 + ECD_03772 0.89 -0.1 3,984,035 + +0.9 3,984,036 - -0.9 3,984,036 - -1.9 3,984,083 + -0.4 3,984,083 + +1.0 3,984,084 - -0.5 3,984,084 - -0.8 3,984,084 - -2.3 3,984,087 + -0.6 3,984,087 + +0.2 3,984,088 - -0.6 3,984,088 - +0.9 3,984,088 - -0.1 3,984,088 - -0.9 3,984,129 + +0.7 3,984,129 + +0.4 3,984,129 + +0.3 3,984,129 + -0.3 3,984,132 + +0.1 3,984,267 + ECD_03773 0.23 -0.6 3,984,267 + ECD_03773 0.23 +1.1 3,984,267 + ECD_03773 0.23 +0.1 3,984,267 + ECD_03773 0.23 +0.2 3,984,268 - ECD_03773 0.23 +1.2 3,984,268 - ECD_03773 0.23 -0.3 3,984,268 - ECD_03773 0.23 -1.8 3,984,269 + ECD_03773 0.24 +0.4 3,984,269 + ECD_03773 0.24 -1.3 3,984,269 + ECD_03773 0.24 +0.4 3,984,269 + ECD_03773 0.24 -0.6 3,984,269 + ECD_03773 0.24 +2.1 3,984,269 + ECD_03773 0.24 +0.7 3,984,269 + ECD_03773 0.24 +0.5 3,984,270 - ECD_03773 0.24 +0.0 3,984,270 - ECD_03773 0.24 +1.7 3,984,270 - ECD_03773 0.24 -0.5 3,984,270 - ECD_03773 0.24 +0.7 3,984,272 + ECD_03773 0.24 +0.4 3,984,509 + ECD_03773 0.48 +0.1 3,984,510 - ECD_03773 0.48 +0.3 3,984,510 - ECD_03773 0.48 -0.2 3,984,510 - ECD_03773 0.48 -0.6
Or see this region's nucleotide sequence