Strain Fitness in Escherichia coli BL21 around ECD_03771

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03769 and ECD_03770 are separated by 98 nucleotidesECD_03770 and ECD_03771 overlap by 7 nucleotidesECD_03771 and ECD_03772 overlap by 4 nucleotidesECD_03772 and ECD_03773 overlap by 4 nucleotides ECD_03769: ECD_03769 - putative transcriptional regulator for sulfoquinovose utilization, at 3,981,256 to 3,982,041 _03769 ECD_03770: ECD_03770 - alpha-D-glucose-1-phosphate phosphatase, anomer-specific, at 3,982,140 to 3,982,739 _03770 ECD_03771: ECD_03771 - BrkB family putative transporter, inner membrane protein, at 3,982,733 to 3,983,605 _03771 ECD_03772: ECD_03772 - D-tyr-tRNA(Tyr) deacylase, at 3,983,602 to 3,984,039 _03772 ECD_03773: ECD_03773 - GNAT family putative N-acetyltransferase, at 3,984,036 to 3,985,025 _03773 Position (kb) 3982 3983 3984Strain fitness (log2 ratio) -2 -1 0 1 2at 3981.769 kb on + strand, within ECD_03769at 3981.776 kb on + strand, within ECD_03769at 3981.777 kb on - strand, within ECD_03769at 3981.837 kb on + strand, within ECD_03769at 3981.897 kb on + strand, within ECD_03769at 3981.898 kb on - strand, within ECD_03769at 3981.898 kb on - strand, within ECD_03769at 3981.898 kb on - strand, within ECD_03769at 3981.898 kb on - strand, within ECD_03769at 3981.901 kb on + strand, within ECD_03769at 3981.901 kb on + strand, within ECD_03769at 3981.901 kb on + strand, within ECD_03769at 3981.901 kb on + strand, within ECD_03769at 3981.901 kb on + strand, within ECD_03769at 3981.902 kb on - strand, within ECD_03769at 3981.902 kb on - strand, within ECD_03769at 3981.902 kb on - strand, within ECD_03769at 3981.902 kb on - strand, within ECD_03769at 3981.995 kb on + strandat 3982.070 kb on - strandat 3982.070 kb on - strandat 3982.070 kb on - strandat 3982.081 kb on + strandat 3982.081 kb on + strandat 3982.081 kb on + strandat 3982.082 kb on - strandat 3982.111 kb on - strandat 3982.146 kb on + strandat 3982.147 kb on - strandat 3982.147 kb on - strandat 3982.149 kb on - strandat 3982.149 kb on - strandat 3982.160 kb on - strandat 3982.216 kb on + strand, within ECD_03770at 3982.242 kb on - strand, within ECD_03770at 3982.350 kb on + strand, within ECD_03770at 3982.350 kb on + strand, within ECD_03770at 3982.350 kb on + strand, within ECD_03770at 3982.351 kb on - strand, within ECD_03770at 3982.421 kb on + strand, within ECD_03770at 3982.421 kb on + strand, within ECD_03770at 3982.422 kb on - strand, within ECD_03770at 3982.422 kb on - strand, within ECD_03770at 3982.478 kb on + strand, within ECD_03770at 3982.529 kb on + strand, within ECD_03770at 3982.529 kb on + strand, within ECD_03770at 3982.529 kb on + strand, within ECD_03770at 3982.529 kb on + strand, within ECD_03770at 3982.530 kb on - strand, within ECD_03770at 3982.530 kb on - strand, within ECD_03770at 3982.533 kb on + strand, within ECD_03770at 3982.533 kb on + strand, within ECD_03770at 3982.533 kb on + strand, within ECD_03770at 3982.533 kb on + strand, within ECD_03770at 3982.533 kb on + strand, within ECD_03770at 3982.534 kb on - strand, within ECD_03770at 3982.534 kb on - strand, within ECD_03770at 3982.534 kb on - strand, within ECD_03770at 3982.534 kb on - strand, within ECD_03770at 3982.534 kb on - strand, within ECD_03770at 3982.619 kb on + strand, within ECD_03770at 3982.619 kb on + strand, within ECD_03770at 3982.649 kb on + strand, within ECD_03770at 3982.650 kb on - strand, within ECD_03770at 3982.650 kb on - strand, within ECD_03770at 3982.651 kb on + strand, within ECD_03770at 3982.651 kb on + strand, within ECD_03770at 3982.651 kb on + strand, within ECD_03770at 3982.651 kb on + strand, within ECD_03770at 3982.651 kb on + strand, within ECD_03770at 3982.652 kb on - strand, within ECD_03770at 3982.652 kb on - strand, within ECD_03770at 3982.652 kb on - strand, within ECD_03770at 3982.682 kb on + strandat 3982.683 kb on - strandat 3982.732 kb on + strandat 3982.732 kb on + strandat 3982.737 kb on + strandat 3982.853 kb on + strand, within ECD_03771at 3982.853 kb on + strand, within ECD_03771at 3982.854 kb on - strand, within ECD_03771at 3982.944 kb on + strand, within ECD_03771at 3982.978 kb on + strand, within ECD_03771at 3982.990 kb on + strand, within ECD_03771at 3982.990 kb on + strand, within ECD_03771at 3982.991 kb on - strand, within ECD_03771at 3982.991 kb on - strand, within ECD_03771at 3983.000 kb on + strand, within ECD_03771at 3983.002 kb on + strand, within ECD_03771at 3983.085 kb on - strand, within ECD_03771at 3983.085 kb on - strand, within ECD_03771at 3983.108 kb on - strand, within ECD_03771at 3983.122 kb on + strand, within ECD_03771at 3983.122 kb on + strand, within ECD_03771at 3983.160 kb on - strand, within ECD_03771at 3983.172 kb on + strand, within ECD_03771at 3983.219 kb on + strand, within ECD_03771at 3983.254 kb on + strand, within ECD_03771at 3983.322 kb on - strand, within ECD_03771at 3983.322 kb on - strand, within ECD_03771at 3983.335 kb on + strand, within ECD_03771at 3983.423 kb on + strand, within ECD_03771at 3983.423 kb on + strand, within ECD_03771at 3983.423 kb on + strand, within ECD_03771at 3983.456 kb on + strand, within ECD_03771at 3983.498 kb on + strand, within ECD_03771at 3983.499 kb on - strand, within ECD_03771at 3983.512 kb on + strand, within ECD_03771at 3983.512 kb on + strand, within ECD_03771at 3983.513 kb on - strand, within ECD_03771at 3983.513 kb on - strand, within ECD_03771at 3983.536 kb on + strandat 3983.536 kb on + strandat 3983.537 kb on - strandat 3983.612 kb on + strandat 3983.915 kb on + strand, within ECD_03772at 3983.916 kb on - strand, within ECD_03772at 3983.916 kb on - strand, within ECD_03772at 3983.916 kb on - strand, within ECD_03772at 3983.917 kb on + strand, within ECD_03772at 3983.917 kb on + strand, within ECD_03772at 3983.917 kb on + strand, within ECD_03772at 3983.917 kb on + strand, within ECD_03772at 3983.917 kb on + strand, within ECD_03772at 3983.917 kb on + strand, within ECD_03772at 3983.918 kb on - strand, within ECD_03772at 3983.918 kb on - strand, within ECD_03772at 3983.918 kb on - strand, within ECD_03772at 3983.918 kb on - strand, within ECD_03772at 3983.918 kb on - strand, within ECD_03772at 3983.918 kb on - strand, within ECD_03772at 3983.923 kb on + strand, within ECD_03772at 3983.923 kb on + strand, within ECD_03772at 3983.924 kb on - strand, within ECD_03772at 3983.993 kb on + strand, within ECD_03772at 3984.035 kb on + strandat 3984.036 kb on - strandat 3984.036 kb on - strandat 3984.083 kb on + strandat 3984.083 kb on + strandat 3984.084 kb on - strandat 3984.084 kb on - strandat 3984.084 kb on - strandat 3984.087 kb on + strandat 3984.087 kb on + strandat 3984.088 kb on - strandat 3984.088 kb on - strandat 3984.088 kb on - strandat 3984.088 kb on - strandat 3984.129 kb on + strandat 3984.129 kb on + strandat 3984.129 kb on + strandat 3984.129 kb on + strandat 3984.132 kb on + strandat 3984.267 kb on + strand, within ECD_03773at 3984.267 kb on + strand, within ECD_03773at 3984.267 kb on + strand, within ECD_03773at 3984.267 kb on + strand, within ECD_03773at 3984.268 kb on - strand, within ECD_03773at 3984.268 kb on - strand, within ECD_03773at 3984.268 kb on - strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.269 kb on + strand, within ECD_03773at 3984.270 kb on - strand, within ECD_03773at 3984.270 kb on - strand, within ECD_03773at 3984.270 kb on - strand, within ECD_03773at 3984.270 kb on - strand, within ECD_03773at 3984.272 kb on + strand, within ECD_03773at 3984.509 kb on + strand, within ECD_03773at 3984.510 kb on - strand, within ECD_03773at 3984.510 kb on - strand, within ECD_03773at 3984.510 kb on - strand, within ECD_03773

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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3,981,769 + ECD_03769 0.65 +0.7
3,981,776 + ECD_03769 0.66 +0.6
3,981,777 - ECD_03769 0.66 -0.7
3,981,837 + ECD_03769 0.74 +0.0
3,981,897 + ECD_03769 0.82 +0.6
3,981,898 - ECD_03769 0.82 +0.1
3,981,898 - ECD_03769 0.82 +0.1
3,981,898 - ECD_03769 0.82 +1.1
3,981,898 - ECD_03769 0.82 +0.2
3,981,901 + ECD_03769 0.82 +1.7
3,981,901 + ECD_03769 0.82 +0.7
3,981,901 + ECD_03769 0.82 +0.1
3,981,901 + ECD_03769 0.82 +0.2
3,981,901 + ECD_03769 0.82 +0.3
3,981,902 - ECD_03769 0.82 +0.8
3,981,902 - ECD_03769 0.82 +0.2
3,981,902 - ECD_03769 0.82 -1.7
3,981,902 - ECD_03769 0.82 -1.7
3,981,995 + +0.1
3,982,070 - -0.1
3,982,070 - -1.1
3,982,070 - +0.5
3,982,081 + -0.5
3,982,081 + +0.8
3,982,081 + +0.3
3,982,082 - +1.4
3,982,111 - -0.4
3,982,146 + -0.5
3,982,147 - +0.4
3,982,147 - +0.9
3,982,149 - +0.0
3,982,149 - -0.9
3,982,160 - +0.5
3,982,216 + ECD_03770 0.13 -0.6
3,982,242 - ECD_03770 0.17 -1.2
3,982,350 + ECD_03770 0.35 -0.2
3,982,350 + ECD_03770 0.35 +0.5
3,982,350 + ECD_03770 0.35 +0.7
3,982,351 - ECD_03770 0.35 -0.1
3,982,421 + ECD_03770 0.47 -0.7
3,982,421 + ECD_03770 0.47 +0.8
3,982,422 - ECD_03770 0.47 +0.0
3,982,422 - ECD_03770 0.47 +0.4
3,982,478 + ECD_03770 0.56 +2.1
3,982,529 + ECD_03770 0.65 -1.0
3,982,529 + ECD_03770 0.65 +1.3
3,982,529 + ECD_03770 0.65 -0.3
3,982,529 + ECD_03770 0.65 +0.2
3,982,530 - ECD_03770 0.65 +0.3
3,982,530 - ECD_03770 0.65 -0.3
3,982,533 + ECD_03770 0.66 +1.1
3,982,533 + ECD_03770 0.66 -0.2
3,982,533 + ECD_03770 0.66 +0.8
3,982,533 + ECD_03770 0.66 -0.1
3,982,533 + ECD_03770 0.66 -0.0
3,982,534 - ECD_03770 0.66 +0.2
3,982,534 - ECD_03770 0.66 -0.3
3,982,534 - ECD_03770 0.66 -0.9
3,982,534 - ECD_03770 0.66 -0.6
3,982,534 - ECD_03770 0.66 +0.4
3,982,619 + ECD_03770 0.80 -1.7
3,982,619 + ECD_03770 0.80 +0.1
3,982,649 + ECD_03770 0.85 +1.1
3,982,650 - ECD_03770 0.85 +0.1
3,982,650 - ECD_03770 0.85 -1.5
3,982,651 + ECD_03770 0.85 -0.5
3,982,651 + ECD_03770 0.85 -0.5
3,982,651 + ECD_03770 0.85 -0.1
3,982,651 + ECD_03770 0.85 -0.4
3,982,651 + ECD_03770 0.85 -0.2
3,982,652 - ECD_03770 0.85 +0.2
3,982,652 - ECD_03770 0.85 +0.1
3,982,652 - ECD_03770 0.85 +0.8
3,982,682 + +0.5
3,982,683 - +0.0
3,982,732 + +0.4
3,982,732 + -0.0
3,982,737 + +0.4
3,982,853 + ECD_03771 0.14 +0.6
3,982,853 + ECD_03771 0.14 +1.4
3,982,854 - ECD_03771 0.14 +0.9
3,982,944 + ECD_03771 0.24 +0.1
3,982,978 + ECD_03771 0.28 +0.7
3,982,990 + ECD_03771 0.29 -0.9
3,982,990 + ECD_03771 0.29 +0.5
3,982,991 - ECD_03771 0.30 -0.1
3,982,991 - ECD_03771 0.30 +0.3
3,983,000 + ECD_03771 0.31 +0.2
3,983,002 + ECD_03771 0.31 +0.4
3,983,085 - ECD_03771 0.40 -1.7
3,983,085 - ECD_03771 0.40 -0.7
3,983,108 - ECD_03771 0.43 -0.1
3,983,122 + ECD_03771 0.45 +0.7
3,983,122 + ECD_03771 0.45 -0.8
3,983,160 - ECD_03771 0.49 -1.3
3,983,172 + ECD_03771 0.50 -1.2
3,983,219 + ECD_03771 0.56 +0.4
3,983,254 + ECD_03771 0.60 +0.3
3,983,322 - ECD_03771 0.67 -0.6
3,983,322 - ECD_03771 0.67 -0.1
3,983,335 + ECD_03771 0.69 +0.5
3,983,423 + ECD_03771 0.79 +0.5
3,983,423 + ECD_03771 0.79 -1.1
3,983,423 + ECD_03771 0.79 +0.5
3,983,456 + ECD_03771 0.83 +1.1
3,983,498 + ECD_03771 0.88 +0.1
3,983,499 - ECD_03771 0.88 +0.2
3,983,512 + ECD_03771 0.89 +0.7
3,983,512 + ECD_03771 0.89 -0.9
3,983,513 - ECD_03771 0.89 -0.2
3,983,513 - ECD_03771 0.89 +0.7
3,983,536 + +1.1
3,983,536 + -0.8
3,983,537 - +0.9
3,983,612 + +0.8
3,983,915 + ECD_03772 0.71 +0.7
3,983,916 - ECD_03772 0.72 +0.7
3,983,916 - ECD_03772 0.72 -0.6
3,983,916 - ECD_03772 0.72 +0.3
3,983,917 + ECD_03772 0.72 +0.2
3,983,917 + ECD_03772 0.72 -0.4
3,983,917 + ECD_03772 0.72 +0.0
3,983,917 + ECD_03772 0.72 -0.2
3,983,917 + ECD_03772 0.72 -0.1
3,983,917 + ECD_03772 0.72 -0.9
3,983,918 - ECD_03772 0.72 +0.2
3,983,918 - ECD_03772 0.72 -1.7
3,983,918 - ECD_03772 0.72 -0.7
3,983,918 - ECD_03772 0.72 -0.0
3,983,918 - ECD_03772 0.72 +0.0
3,983,918 - ECD_03772 0.72 +1.1
3,983,923 + ECD_03772 0.73 -0.1
3,983,923 + ECD_03772 0.73 +0.0
3,983,924 - ECD_03772 0.74 +1.7
3,983,993 + ECD_03772 0.89 -0.1
3,984,035 + +0.9
3,984,036 - -0.9
3,984,036 - -1.9
3,984,083 + -0.4
3,984,083 + +1.0
3,984,084 - -0.5
3,984,084 - -0.8
3,984,084 - -2.3
3,984,087 + -0.6
3,984,087 + +0.2
3,984,088 - -0.6
3,984,088 - +0.9
3,984,088 - -0.1
3,984,088 - -0.9
3,984,129 + +0.7
3,984,129 + +0.4
3,984,129 + +0.3
3,984,129 + -0.3
3,984,132 + +0.1
3,984,267 + ECD_03773 0.23 -0.6
3,984,267 + ECD_03773 0.23 +1.1
3,984,267 + ECD_03773 0.23 +0.1
3,984,267 + ECD_03773 0.23 +0.2
3,984,268 - ECD_03773 0.23 +1.2
3,984,268 - ECD_03773 0.23 -0.3
3,984,268 - ECD_03773 0.23 -1.8
3,984,269 + ECD_03773 0.24 +0.4
3,984,269 + ECD_03773 0.24 -1.3
3,984,269 + ECD_03773 0.24 +0.4
3,984,269 + ECD_03773 0.24 -0.6
3,984,269 + ECD_03773 0.24 +2.1
3,984,269 + ECD_03773 0.24 +0.7
3,984,269 + ECD_03773 0.24 +0.5
3,984,270 - ECD_03773 0.24 +0.0
3,984,270 - ECD_03773 0.24 +1.7
3,984,270 - ECD_03773 0.24 -0.5
3,984,270 - ECD_03773 0.24 +0.7
3,984,272 + ECD_03773 0.24 +0.4
3,984,509 + ECD_03773 0.48 +0.1
3,984,510 - ECD_03773 0.48 +0.3
3,984,510 - ECD_03773 0.48 -0.2
3,984,510 - ECD_03773 0.48 -0.6

Or see this region's nucleotide sequence