Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03569 and ECD_03570 are separated by 111 nucleotides ECD_03570 and ECD_03571 are separated by 305 nucleotides ECD_03571 and ECD_03572 are separated by 1 nucleotides
ECD_03569: ECD_03569 - heat shock chaperone, at 3,755,265 to 3,755,693
_03569
ECD_03570: ECD_03570 - heat shock chaperone, at 3,755,805 to 3,756,218
_03570
ECD_03571: ECD_03571 - DUF1375 family outer membrane protein, at 3,756,524 to 3,756,856
_03571
ECD_03572: ECD_03572 - DUF3748 family protein, at 3,756,858 to 3,758,072
_03572
Position (kb)
3756
3757 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3755.590 kb on + strand, within ECD_03569 at 3755.590 kb on + strand, within ECD_03569 at 3755.591 kb on - strand, within ECD_03569 at 3755.687 kb on + strand at 3755.687 kb on + strand at 3755.687 kb on + strand at 3755.709 kb on + strand at 3755.710 kb on - strand at 3755.710 kb on - strand at 3755.710 kb on - strand at 3755.710 kb on - strand at 3755.721 kb on - strand at 3755.721 kb on - strand at 3755.749 kb on - strand at 3755.799 kb on - strand at 3755.806 kb on + strand at 3755.866 kb on + strand, within ECD_03570 at 3755.866 kb on + strand, within ECD_03570 at 3755.866 kb on + strand, within ECD_03570 at 3755.867 kb on - strand, within ECD_03570 at 3755.880 kb on + strand, within ECD_03570 at 3755.881 kb on - strand, within ECD_03570 at 3755.888 kb on + strand, within ECD_03570 at 3755.965 kb on + strand, within ECD_03570 at 3755.965 kb on + strand, within ECD_03570 at 3755.965 kb on + strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3756.018 kb on - strand, within ECD_03570 at 3756.068 kb on + strand, within ECD_03570 at 3756.068 kb on + strand, within ECD_03570 at 3756.107 kb on + strand, within ECD_03570 at 3756.110 kb on - strand, within ECD_03570 at 3756.129 kb on - strand, within ECD_03570 at 3756.190 kb on + strand at 3756.202 kb on - strand at 3756.202 kb on - strand at 3756.212 kb on + strand at 3756.213 kb on - strand at 3756.219 kb on - strand at 3756.225 kb on + strand at 3756.226 kb on - strand at 3756.249 kb on + strand at 3756.249 kb on + strand at 3756.250 kb on - strand at 3756.250 kb on - strand at 3756.250 kb on - strand at 3756.250 kb on - strand at 3756.313 kb on - strand at 3756.320 kb on - strand at 3756.354 kb on - strand at 3756.378 kb on + strand at 3756.378 kb on + strand at 3756.385 kb on + strand at 3756.385 kb on + strand at 3756.385 kb on + strand at 3756.386 kb on - strand at 3756.392 kb on + strand at 3756.447 kb on + strand at 3756.448 kb on - strand at 3756.448 kb on - strand at 3756.460 kb on - strand at 3756.460 kb on - strand at 3756.479 kb on + strand at 3756.480 kb on - strand at 3756.480 kb on - strand at 3756.482 kb on - strand at 3756.521 kb on - strand at 3756.524 kb on - strand at 3756.528 kb on + strand at 3756.528 kb on + strand at 3756.543 kb on + strand at 3756.544 kb on - strand at 3756.555 kb on + strand at 3756.555 kb on + strand at 3756.555 kb on + strand at 3756.556 kb on - strand at 3756.686 kb on - strand, within ECD_03571 at 3756.827 kb on - strand at 3756.850 kb on + strand at 3756.851 kb on - strand at 3756.976 kb on + strand at 3756.977 kb on - strand at 3756.977 kb on - strand at 3757.128 kb on - strand, within ECD_03572 at 3757.151 kb on + strand, within ECD_03572 at 3757.225 kb on - strand, within ECD_03572 at 3757.360 kb on - strand, within ECD_03572 at 3757.360 kb on - strand, within ECD_03572 at 3757.456 kb on + strand, within ECD_03572 at 3757.456 kb on + strand, within ECD_03572 at 3757.457 kb on - strand, within ECD_03572 at 3757.457 kb on - strand, within ECD_03572 at 3757.457 kb on - strand, within ECD_03572 at 3757.506 kb on - strand, within ECD_03572 at 3757.537 kb on + strand, within ECD_03572 at 3757.538 kb on - strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.643 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.646 kb on - strand, within ECD_03572 at 3757.646 kb on - strand, within ECD_03572 at 3757.649 kb on + strand, within ECD_03572 at 3757.650 kb on - strand, within ECD_03572 at 3757.719 kb on - strand, within ECD_03572 at 3757.846 kb on + strand, within ECD_03572 at 3757.846 kb on + strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,755,590 + ECD_03569 0.76 -0.1 3,755,590 + ECD_03569 0.76 -0.8 3,755,591 - ECD_03569 0.76 -0.8 3,755,687 + +0.4 3,755,687 + -0.7 3,755,687 + +1.1 3,755,709 + +0.3 3,755,710 - +0.1 3,755,710 - +0.4 3,755,710 - +1.1 3,755,710 - +0.5 3,755,721 - -0.7 3,755,721 - +0.5 3,755,749 - +0.4 3,755,799 - +0.5 3,755,806 + +0.7 3,755,866 + ECD_03570 0.15 +0.1 3,755,866 + ECD_03570 0.15 +0.7 3,755,866 + ECD_03570 0.15 +1.0 3,755,867 - ECD_03570 0.15 +1.2 3,755,880 + ECD_03570 0.18 +0.2 3,755,881 - ECD_03570 0.18 +0.5 3,755,888 + ECD_03570 0.20 -0.9 3,755,965 + ECD_03570 0.39 -0.4 3,755,965 + ECD_03570 0.39 -0.7 3,755,965 + ECD_03570 0.39 +0.1 3,755,966 - ECD_03570 0.39 -0.5 3,755,966 - ECD_03570 0.39 +0.0 3,755,966 - ECD_03570 0.39 -0.6 3,755,966 - ECD_03570 0.39 -0.7 3,755,966 - ECD_03570 0.39 +0.5 3,755,966 - ECD_03570 0.39 -0.2 3,756,018 - ECD_03570 0.51 +0.7 3,756,068 + ECD_03570 0.64 +0.1 3,756,068 + ECD_03570 0.64 +0.7 3,756,107 + ECD_03570 0.73 +0.8 3,756,110 - ECD_03570 0.74 +0.2 3,756,129 - ECD_03570 0.78 +0.3 3,756,190 + +0.9 3,756,202 - +0.1 3,756,202 - -1.1 3,756,212 + +0.1 3,756,213 - -0.2 3,756,219 - +1.3 3,756,225 + -0.8 3,756,226 - -0.1 3,756,249 + -0.3 3,756,249 + -0.0 3,756,250 - +0.3 3,756,250 - +0.2 3,756,250 - +0.7 3,756,250 - -0.3 3,756,313 - -0.8 3,756,320 - -0.8 3,756,354 - +0.3 3,756,378 + -0.5 3,756,378 + -0.7 3,756,385 + +0.1 3,756,385 + +0.2 3,756,385 + -0.3 3,756,386 - -0.2 3,756,392 + -0.6 3,756,447 + -0.2 3,756,448 - +0.8 3,756,448 - -1.7 3,756,460 - -0.2 3,756,460 - -0.1 3,756,479 + -0.0 3,756,480 - +0.0 3,756,480 - -0.3 3,756,482 - -0.0 3,756,521 - -0.5 3,756,524 - +0.2 3,756,528 + -0.1 3,756,528 + -0.6 3,756,543 + +0.2 3,756,544 - +3.1 3,756,555 + -0.9 3,756,555 + +1.4 3,756,555 + -0.7 3,756,556 - +0.3 3,756,686 - ECD_03571 0.49 -0.8 3,756,827 - -0.9 3,756,850 + -1.2 3,756,851 - +0.5 3,756,976 + +1.1 3,756,977 - +1.7 3,756,977 - +0.0 3,757,128 - ECD_03572 0.22 -0.2 3,757,151 + ECD_03572 0.24 -0.2 3,757,225 - ECD_03572 0.30 -1.3 3,757,360 - ECD_03572 0.41 +0.1 3,757,360 - ECD_03572 0.41 +0.7 3,757,456 + ECD_03572 0.49 +1.7 3,757,456 + ECD_03572 0.49 -0.3 3,757,457 - ECD_03572 0.49 -0.0 3,757,457 - ECD_03572 0.49 +0.2 3,757,457 - ECD_03572 0.49 -0.4 3,757,506 - ECD_03572 0.53 -0.0 3,757,537 + ECD_03572 0.56 -0.3 3,757,538 - ECD_03572 0.56 -1.0 3,757,560 + ECD_03572 0.58 -0.3 3,757,560 + ECD_03572 0.58 +0.5 3,757,560 + ECD_03572 0.58 -1.5 3,757,560 + ECD_03572 0.58 +0.8 3,757,632 + ECD_03572 0.64 +0.7 3,757,632 + ECD_03572 0.64 -1.2 3,757,632 + ECD_03572 0.64 -1.3 3,757,632 + ECD_03572 0.64 -0.5 3,757,632 + ECD_03572 0.64 -0.1 3,757,632 + ECD_03572 0.64 -0.7 3,757,632 + ECD_03572 0.64 +1.2 3,757,633 - ECD_03572 0.64 -0.0 3,757,633 - ECD_03572 0.64 -0.3 3,757,633 - ECD_03572 0.64 +0.9 3,757,633 - ECD_03572 0.64 -0.2 3,757,633 - ECD_03572 0.64 +0.5 3,757,633 - ECD_03572 0.64 -0.7 3,757,633 - ECD_03572 0.64 -0.2 3,757,633 - ECD_03572 0.64 +0.5 3,757,633 - ECD_03572 0.64 +0.0 3,757,633 - ECD_03572 0.64 -1.0 3,757,633 - ECD_03572 0.64 -0.3 3,757,643 + ECD_03572 0.65 +0.9 3,757,645 + ECD_03572 0.65 -0.1 3,757,645 + ECD_03572 0.65 +0.1 3,757,645 + ECD_03572 0.65 +0.5 3,757,645 + ECD_03572 0.65 +1.1 3,757,645 + ECD_03572 0.65 +0.7 3,757,646 - ECD_03572 0.65 -0.6 3,757,646 - ECD_03572 0.65 +0.2 3,757,649 + ECD_03572 0.65 -0.7 3,757,650 - ECD_03572 0.65 +1.7 3,757,719 - ECD_03572 0.71 -0.2 3,757,846 + ECD_03572 0.81 +2.5 3,757,846 + ECD_03572 0.81 +1.0 3,757,847 - ECD_03572 0.81 -0.8 3,757,847 - ECD_03572 0.81 +0.2 3,757,847 - ECD_03572 0.81 -0.3 3,757,847 - ECD_03572 0.81 -0.2
Or see this region's nucleotide sequence