Strain Fitness in Escherichia coli BL21 around ECD_03520

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03519 and ECD_03520 are separated by 180 nucleotidesECD_03520 and ECD_03521 are separated by 8 nucleotides ECD_03519: ECD_03519 - putative transcriptional regulator, at 3,707,129 to 3,708,223 _03519 ECD_03520: ECD_03520 - hypothetical protein, at 3,708,404 to 3,709,762 _03520 ECD_03521: ECD_03521 - hypothetical protein, at 3,709,771 to 3,712,158 _03521 Position (kb) 3708 3709 3710Strain fitness (log2 ratio) -2 -1 0 1 2at 3707.417 kb on - strand, within ECD_03519at 3707.422 kb on + strand, within ECD_03519at 3707.471 kb on - strand, within ECD_03519at 3707.485 kb on + strand, within ECD_03519at 3707.540 kb on - strand, within ECD_03519at 3707.596 kb on + strand, within ECD_03519at 3707.625 kb on + strand, within ECD_03519at 3707.626 kb on - strand, within ECD_03519at 3707.641 kb on + strand, within ECD_03519at 3707.737 kb on + strand, within ECD_03519at 3707.738 kb on - strand, within ECD_03519at 3707.798 kb on + strand, within ECD_03519at 3707.798 kb on + strand, within ECD_03519at 3707.815 kb on + strand, within ECD_03519at 3707.878 kb on + strand, within ECD_03519at 3707.879 kb on - strand, within ECD_03519at 3708.113 kb on - strand, within ECD_03519at 3708.393 kb on + strandat 3708.439 kb on + strandat 3708.475 kb on - strandat 3708.675 kb on - strand, within ECD_03520at 3708.966 kb on - strand, within ECD_03520at 3709.004 kb on - strand, within ECD_03520at 3709.056 kb on - strand, within ECD_03520at 3709.058 kb on - strand, within ECD_03520at 3709.210 kb on + strand, within ECD_03520at 3709.477 kb on + strand, within ECD_03520at 3709.478 kb on - strand, within ECD_03520at 3709.489 kb on - strand, within ECD_03520at 3709.537 kb on - strand, within ECD_03520at 3709.705 kb on + strandat 3709.826 kb on + strandat 3709.832 kb on + strandat 3709.836 kb on - strandat 3710.209 kb on - strand, within ECD_03521at 3710.305 kb on - strand, within ECD_03521at 3710.511 kb on - strand, within ECD_03521at 3710.667 kb on + strand, within ECD_03521

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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3,707,417 - ECD_03519 0.26 +0.9
3,707,422 + ECD_03519 0.27 -0.7
3,707,471 - ECD_03519 0.31 +0.2
3,707,485 + ECD_03519 0.33 -0.3
3,707,540 - ECD_03519 0.38 +0.9
3,707,596 + ECD_03519 0.43 +0.6
3,707,625 + ECD_03519 0.45 +0.3
3,707,626 - ECD_03519 0.45 +0.2
3,707,641 + ECD_03519 0.47 +0.7
3,707,737 + ECD_03519 0.56 -0.9
3,707,738 - ECD_03519 0.56 -0.9
3,707,798 + ECD_03519 0.61 +0.1
3,707,798 + ECD_03519 0.61 -0.1
3,707,815 + ECD_03519 0.63 +0.1
3,707,878 + ECD_03519 0.68 +0.4
3,707,879 - ECD_03519 0.68 -0.2
3,708,113 - ECD_03519 0.90 +0.5
3,708,393 + +0.5
3,708,439 + +0.0
3,708,475 - +0.7
3,708,675 - ECD_03520 0.20 +1.1
3,708,966 - ECD_03520 0.41 +0.6
3,709,004 - ECD_03520 0.44 -1.9
3,709,056 - ECD_03520 0.48 +0.6
3,709,058 - ECD_03520 0.48 +0.9
3,709,210 + ECD_03520 0.59 +0.2
3,709,477 + ECD_03520 0.79 +1.3
3,709,478 - ECD_03520 0.79 +2.0
3,709,489 - ECD_03520 0.80 +0.0
3,709,537 - ECD_03520 0.83 +0.3
3,709,705 + -0.1
3,709,826 + -1.1
3,709,832 + -1.1
3,709,836 - -0.0
3,710,209 - ECD_03521 0.18 -0.6
3,710,305 - ECD_03521 0.22 -0.3
3,710,511 - ECD_03521 0.31 +0.0
3,710,667 + ECD_03521 0.38 -0.3

Or see this region's nucleotide sequence