Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03519 and ECD_03520 are separated by 180 nucleotides ECD_03520 and ECD_03521 are separated by 8 nucleotides
ECD_03519: ECD_03519 - putative transcriptional regulator, at 3,707,129 to 3,708,223
_03519
ECD_03520: ECD_03520 - hypothetical protein, at 3,708,404 to 3,709,762
_03520
ECD_03521: ECD_03521 - hypothetical protein, at 3,709,771 to 3,712,158
_03521
Position (kb)
3708
3709
3710 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3707.417 kb on - strand, within ECD_03519 at 3707.422 kb on + strand, within ECD_03519 at 3707.471 kb on - strand, within ECD_03519 at 3707.485 kb on + strand, within ECD_03519 at 3707.540 kb on - strand, within ECD_03519 at 3707.596 kb on + strand, within ECD_03519 at 3707.625 kb on + strand, within ECD_03519 at 3707.626 kb on - strand, within ECD_03519 at 3707.641 kb on + strand, within ECD_03519 at 3707.737 kb on + strand, within ECD_03519 at 3707.738 kb on - strand, within ECD_03519 at 3707.798 kb on + strand, within ECD_03519 at 3707.798 kb on + strand, within ECD_03519 at 3707.815 kb on + strand, within ECD_03519 at 3707.878 kb on + strand, within ECD_03519 at 3707.879 kb on - strand, within ECD_03519 at 3708.113 kb on - strand, within ECD_03519 at 3708.393 kb on + strand at 3708.439 kb on + strand at 3708.475 kb on - strand at 3708.675 kb on - strand, within ECD_03520 at 3708.966 kb on - strand, within ECD_03520 at 3709.004 kb on - strand, within ECD_03520 at 3709.056 kb on - strand, within ECD_03520 at 3709.058 kb on - strand, within ECD_03520 at 3709.210 kb on + strand, within ECD_03520 at 3709.477 kb on + strand, within ECD_03520 at 3709.478 kb on - strand, within ECD_03520 at 3709.489 kb on - strand, within ECD_03520 at 3709.537 kb on - strand, within ECD_03520 at 3709.705 kb on + strand at 3709.826 kb on + strand at 3709.832 kb on + strand at 3709.836 kb on - strand at 3710.209 kb on - strand, within ECD_03521 at 3710.305 kb on - strand, within ECD_03521 at 3710.511 kb on - strand, within ECD_03521 at 3710.667 kb on + strand, within ECD_03521
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,707,417 - ECD_03519 0.26 +0.9 3,707,422 + ECD_03519 0.27 -0.7 3,707,471 - ECD_03519 0.31 +0.2 3,707,485 + ECD_03519 0.33 -0.3 3,707,540 - ECD_03519 0.38 +0.9 3,707,596 + ECD_03519 0.43 +0.6 3,707,625 + ECD_03519 0.45 +0.3 3,707,626 - ECD_03519 0.45 +0.2 3,707,641 + ECD_03519 0.47 +0.7 3,707,737 + ECD_03519 0.56 -0.9 3,707,738 - ECD_03519 0.56 -0.9 3,707,798 + ECD_03519 0.61 +0.1 3,707,798 + ECD_03519 0.61 -0.1 3,707,815 + ECD_03519 0.63 +0.1 3,707,878 + ECD_03519 0.68 +0.4 3,707,879 - ECD_03519 0.68 -0.2 3,708,113 - ECD_03519 0.90 +0.5 3,708,393 + +0.5 3,708,439 + +0.0 3,708,475 - +0.7 3,708,675 - ECD_03520 0.20 +1.1 3,708,966 - ECD_03520 0.41 +0.6 3,709,004 - ECD_03520 0.44 -1.9 3,709,056 - ECD_03520 0.48 +0.6 3,709,058 - ECD_03520 0.48 +0.9 3,709,210 + ECD_03520 0.59 +0.2 3,709,477 + ECD_03520 0.79 +1.3 3,709,478 - ECD_03520 0.79 +2.0 3,709,489 - ECD_03520 0.80 +0.0 3,709,537 - ECD_03520 0.83 +0.3 3,709,705 + -0.1 3,709,826 + -1.1 3,709,832 + -1.1 3,709,836 - -0.0 3,710,209 - ECD_03521 0.18 -0.6 3,710,305 - ECD_03521 0.22 -0.3 3,710,511 - ECD_03521 0.31 +0.0 3,710,667 + ECD_03521 0.38 -0.3
Or see this region's nucleotide sequence