Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03318 and ECD_03319 are separated by 101 nucleotides ECD_03319 and ECD_03320 are separated by 220 nucleotides ECD_03320 and ECD_03321 are separated by 72 nucleotides ECD_03321 and ECD_03322 are separated by 3 nucleotides
ECD_03318: ECD_03318 - zinc, cobalt and lead efflux system, at 3,468,835 to 3,471,033
_03318
ECD_03319: ECD_03319 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 3,471,135 to 3,471,380
_03319
ECD_03320: ECD_03320 - DUF165 family inner membrane protein, at 3,471,601 to 3,472,266
_03320
ECD_03321: ECD_03321 - putative lipoprotein, at 3,472,339 to 3,472,896
_03321
ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117
_03322
Position (kb)
3471
3472
3473 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3470.895 kb on + strand at 3471.146 kb on + strand at 3471.147 kb on - strand at 3471.410 kb on + strand at 3471.416 kb on - strand at 3471.484 kb on + strand at 3471.484 kb on + strand at 3471.492 kb on + strand at 3471.530 kb on + strand at 3471.530 kb on + strand at 3471.530 kb on + strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.531 kb on - strand at 3471.540 kb on + strand at 3471.554 kb on + strand at 3471.554 kb on + strand at 3471.555 kb on - strand at 3471.555 kb on - strand at 3471.555 kb on - strand at 3471.558 kb on + strand at 3471.559 kb on - strand at 3471.559 kb on - strand at 3471.600 kb on + strand at 3471.600 kb on + strand at 3471.682 kb on - strand, within ECD_03320 at 3471.685 kb on + strand, within ECD_03320 at 3471.686 kb on - strand, within ECD_03320 at 3471.686 kb on - strand, within ECD_03320 at 3471.810 kb on + strand, within ECD_03320 at 3471.850 kb on + strand, within ECD_03320 at 3471.851 kb on - strand, within ECD_03320 at 3471.851 kb on - strand, within ECD_03320 at 3471.871 kb on + strand, within ECD_03320 at 3471.871 kb on + strand, within ECD_03320 at 3471.871 kb on + strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.872 kb on - strand, within ECD_03320 at 3471.874 kb on - strand, within ECD_03320 at 3471.955 kb on + strand, within ECD_03320 at 3472.110 kb on + strand, within ECD_03320 at 3472.192 kb on + strand, within ECD_03320 at 3472.193 kb on - strand, within ECD_03320 at 3472.209 kb on + strand at 3472.209 kb on + strand at 3472.210 kb on - strand at 3472.289 kb on + strand at 3472.353 kb on + strand at 3472.358 kb on - strand at 3472.358 kb on - strand at 3472.447 kb on - strand, within ECD_03321 at 3472.509 kb on + strand, within ECD_03321 at 3472.548 kb on + strand, within ECD_03321 at 3472.549 kb on - strand, within ECD_03321 at 3472.695 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.740 kb on + strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.741 kb on - strand, within ECD_03321 at 3472.743 kb on + strand, within ECD_03321 at 3472.743 kb on + strand, within ECD_03321 at 3472.744 kb on - strand, within ECD_03321 at 3472.768 kb on + strand, within ECD_03321 at 3472.768 kb on + strand, within ECD_03321 at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.875 kb on + strand at 3472.878 kb on + strand at 3472.963 kb on + strand at 3472.964 kb on - strand at 3473.001 kb on - strand at 3473.074 kb on - strand, within ECD_03322 at 3473.077 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.084 kb on + strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.085 kb on - strand, within ECD_03322 at 3473.182 kb on + strand, within ECD_03322 at 3473.243 kb on - strand, within ECD_03322
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,470,895 + +0.1 3,471,146 + -0.4 3,471,147 - +0.2 3,471,410 + -0.0 3,471,416 - +0.7 3,471,484 + +1.0 3,471,484 + +1.1 3,471,492 + +0.5 3,471,530 + -1.0 3,471,530 + +0.5 3,471,530 + +0.2 3,471,531 - -0.1 3,471,531 - -1.5 3,471,531 - -0.3 3,471,531 - +1.0 3,471,531 - -1.8 3,471,531 - +0.8 3,471,531 - +0.1 3,471,531 - -0.5 3,471,540 + +0.4 3,471,554 + +0.0 3,471,554 + +0.1 3,471,555 - +0.5 3,471,555 - +0.4 3,471,555 - -0.5 3,471,558 + -0.1 3,471,559 - +0.4 3,471,559 - -0.2 3,471,600 + -1.3 3,471,600 + -1.5 3,471,682 - ECD_03320 0.12 -0.3 3,471,685 + ECD_03320 0.13 -2.5 3,471,686 - ECD_03320 0.13 +0.7 3,471,686 - ECD_03320 0.13 +0.4 3,471,810 + ECD_03320 0.31 -0.6 3,471,850 + ECD_03320 0.37 +0.1 3,471,851 - ECD_03320 0.38 +0.4 3,471,851 - ECD_03320 0.38 +0.8 3,471,871 + ECD_03320 0.41 +0.8 3,471,871 + ECD_03320 0.41 -0.7 3,471,871 + ECD_03320 0.41 +0.3 3,471,872 - ECD_03320 0.41 +0.1 3,471,872 - ECD_03320 0.41 +1.3 3,471,872 - ECD_03320 0.41 -0.3 3,471,872 - ECD_03320 0.41 -0.3 3,471,872 - ECD_03320 0.41 +0.8 3,471,872 - ECD_03320 0.41 +1.3 3,471,872 - ECD_03320 0.41 +0.5 3,471,872 - ECD_03320 0.41 -0.7 3,471,872 - ECD_03320 0.41 +0.5 3,471,872 - ECD_03320 0.41 +0.4 3,471,874 - ECD_03320 0.41 -0.2 3,471,955 + ECD_03320 0.53 -0.3 3,472,110 + ECD_03320 0.76 +0.0 3,472,192 + ECD_03320 0.89 +1.5 3,472,193 - ECD_03320 0.89 +0.9 3,472,209 + +0.9 3,472,209 + -0.1 3,472,210 - +1.5 3,472,289 + +1.9 3,472,353 + +0.3 3,472,358 - -0.9 3,472,358 - -0.8 3,472,447 - ECD_03321 0.19 -1.0 3,472,509 + ECD_03321 0.30 +0.1 3,472,548 + ECD_03321 0.37 -0.5 3,472,549 - ECD_03321 0.38 -0.1 3,472,695 + ECD_03321 0.64 -1.8 3,472,740 + ECD_03321 0.72 -0.1 3,472,740 + ECD_03321 0.72 +1.0 3,472,740 + ECD_03321 0.72 -0.4 3,472,740 + ECD_03321 0.72 +0.1 3,472,741 - ECD_03321 0.72 +0.0 3,472,741 - ECD_03321 0.72 -0.4 3,472,741 - ECD_03321 0.72 -0.1 3,472,743 + ECD_03321 0.72 +0.4 3,472,743 + ECD_03321 0.72 -0.5 3,472,744 - ECD_03321 0.73 -0.4 3,472,768 + ECD_03321 0.77 +0.5 3,472,768 + ECD_03321 0.77 -0.7 3,472,875 + -0.7 3,472,875 + -0.8 3,472,875 + -0.6 3,472,875 + +0.1 3,472,878 + -0.8 3,472,963 + +0.8 3,472,964 - -0.5 3,473,001 - +1.4 3,473,074 - ECD_03322 0.14 -0.8 3,473,077 + ECD_03322 0.15 -2.9 3,473,084 + ECD_03322 0.15 +0.1 3,473,084 + ECD_03322 0.15 -0.5 3,473,084 + ECD_03322 0.15 -1.6 3,473,085 - ECD_03322 0.15 +0.9 3,473,085 - ECD_03322 0.15 +0.1 3,473,085 - ECD_03322 0.15 +0.0 3,473,182 + ECD_03322 0.23 -1.1 3,473,243 - ECD_03322 0.28 +0.3
Or see this region's nucleotide sequence