Strain Fitness in Escherichia coli BL21 around ECD_03242

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03241 and ECD_03242 are separated by 56 nucleotidesECD_03242 and ECD_03243 are separated by 400 nucleotides ECD_03241: ECD_03241 - 3-dehydroquinate synthase, at 3,377,776 to 3,378,864 _03241 ECD_03242: ECD_03242 - shikimate kinase I, at 3,378,921 to 3,379,442 _03242 ECD_03243: ECD_03243 - DNA catabolic putative fimbrial transporter, at 3,379,843 to 3,381,081 _03243 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -2 -1 0 1 2at 3377.922 kb on - strand, within ECD_03241at 3377.984 kb on - strand, within ECD_03241at 3377.986 kb on - strand, within ECD_03241at 3377.986 kb on - strand, within ECD_03241at 3377.986 kb on - strand, within ECD_03241at 3377.989 kb on - strand, within ECD_03241at 3378.077 kb on - strand, within ECD_03241at 3378.077 kb on - strand, within ECD_03241at 3378.211 kb on - strand, within ECD_03241at 3378.211 kb on - strand, within ECD_03241at 3378.294 kb on + strand, within ECD_03241at 3378.393 kb on - strand, within ECD_03241at 3378.472 kb on + strand, within ECD_03241at 3378.548 kb on - strand, within ECD_03241at 3378.573 kb on + strand, within ECD_03241at 3378.574 kb on - strand, within ECD_03241at 3378.639 kb on + strand, within ECD_03241at 3378.799 kb on - strandat 3378.831 kb on + strandat 3378.831 kb on + strandat 3378.832 kb on - strandat 3378.832 kb on - strandat 3378.832 kb on - strandat 3378.832 kb on - strandat 3378.832 kb on - strandat 3378.832 kb on - strandat 3378.847 kb on - strandat 3378.886 kb on - strandat 3378.886 kb on - strandat 3378.886 kb on - strandat 3378.886 kb on - strandat 3378.886 kb on - strandat 3378.886 kb on - strandat 3378.906 kb on + strandat 3378.907 kb on - strandat 3378.907 kb on - strandat 3378.907 kb on - strandat 3378.907 kb on - strandat 3378.907 kb on - strandat 3378.908 kb on + strandat 3378.909 kb on - strandat 3378.909 kb on - strandat 3378.909 kb on - strandat 3378.909 kb on - strandat 3378.910 kb on + strandat 3378.911 kb on - strandat 3378.911 kb on - strandat 3378.911 kb on - strandat 3378.922 kb on + strandat 3378.923 kb on - strandat 3378.944 kb on + strandat 3378.945 kb on - strandat 3379.013 kb on - strand, within ECD_03242at 3379.013 kb on - strand, within ECD_03242at 3379.013 kb on - strand, within ECD_03242at 3379.205 kb on + strand, within ECD_03242at 3379.425 kb on - strandat 3379.455 kb on - strandat 3379.455 kb on - strandat 3379.455 kb on - strandat 3379.455 kb on - strandat 3379.457 kb on + strandat 3379.457 kb on + strandat 3379.458 kb on - strandat 3379.458 kb on - strandat 3379.458 kb on - strandat 3379.477 kb on - strandat 3379.526 kb on - strandat 3379.526 kb on - strandat 3379.562 kb on + strandat 3379.608 kb on + strandat 3379.608 kb on + strandat 3379.674 kb on - strandat 3379.674 kb on - strandat 3379.679 kb on - strandat 3379.710 kb on - strandat 3379.710 kb on - strandat 3379.770 kb on + strandat 3379.770 kb on + strandat 3379.770 kb on + strandat 3379.771 kb on - strandat 3379.771 kb on - strandat 3379.771 kb on - strandat 3379.775 kb on + strandat 3379.775 kb on + strandat 3379.776 kb on - strandat 3379.776 kb on - strandat 3379.776 kb on - strandat 3379.776 kb on - strandat 3379.776 kb on - strandat 3379.776 kb on - strandat 3379.779 kb on + strandat 3379.796 kb on + strandat 3379.796 kb on + strandat 3379.796 kb on + strandat 3379.796 kb on + strandat 3379.797 kb on - strandat 3380.055 kb on + strand, within ECD_03243at 3380.056 kb on - strand, within ECD_03243at 3380.089 kb on + strand, within ECD_03243at 3380.090 kb on - strand, within ECD_03243at 3380.122 kb on + strand, within ECD_03243at 3380.123 kb on - strand, within ECD_03243at 3380.190 kb on + strand, within ECD_03243at 3380.190 kb on + strand, within ECD_03243at 3380.191 kb on - strand, within ECD_03243at 3380.256 kb on + strand, within ECD_03243at 3380.256 kb on + strand, within ECD_03243at 3380.257 kb on - strand, within ECD_03243at 3380.305 kb on - strand, within ECD_03243at 3380.307 kb on + strand, within ECD_03243

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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3,377,922 - ECD_03241 0.13 +0.6
3,377,984 - ECD_03241 0.19 +1.8
3,377,986 - ECD_03241 0.19 -1.5
3,377,986 - ECD_03241 0.19 +0.5
3,377,986 - ECD_03241 0.19 +0.3
3,377,989 - ECD_03241 0.20 +0.4
3,378,077 - ECD_03241 0.28 +1.0
3,378,077 - ECD_03241 0.28 +0.1
3,378,211 - ECD_03241 0.40 +0.7
3,378,211 - ECD_03241 0.40 -0.1
3,378,294 + ECD_03241 0.48 +0.2
3,378,393 - ECD_03241 0.57 +0.5
3,378,472 + ECD_03241 0.64 +0.3
3,378,548 - ECD_03241 0.71 -2.6
3,378,573 + ECD_03241 0.73 -1.2
3,378,574 - ECD_03241 0.73 -0.5
3,378,639 + ECD_03241 0.79 -1.3
3,378,799 - +0.5
3,378,831 + -0.5
3,378,831 + -0.8
3,378,832 - +0.9
3,378,832 - +0.5
3,378,832 - -0.9
3,378,832 - -0.8
3,378,832 - -0.6
3,378,832 - +0.7
3,378,847 - -1.8
3,378,886 - +0.2
3,378,886 - +1.0
3,378,886 - +0.2
3,378,886 - -0.5
3,378,886 - -1.5
3,378,886 - -0.8
3,378,906 + -0.6
3,378,907 - +0.5
3,378,907 - +0.2
3,378,907 - +0.5
3,378,907 - +1.2
3,378,907 - -0.8
3,378,908 + +0.9
3,378,909 - +0.1
3,378,909 - +0.1
3,378,909 - +0.9
3,378,909 - +1.0
3,378,910 + +0.2
3,378,911 - -0.3
3,378,911 - +0.4
3,378,911 - -0.7
3,378,922 + +1.0
3,378,923 - +1.0
3,378,944 + +1.5
3,378,945 - -0.3
3,379,013 - ECD_03242 0.18 -1.8
3,379,013 - ECD_03242 0.18 -1.0
3,379,013 - ECD_03242 0.18 -0.5
3,379,205 + ECD_03242 0.54 -0.8
3,379,425 - -0.7
3,379,455 - +1.4
3,379,455 - -0.2
3,379,455 - -1.0
3,379,455 - -0.3
3,379,457 + -0.0
3,379,457 + -0.5
3,379,458 - +0.0
3,379,458 - -1.0
3,379,458 - -0.6
3,379,477 - +0.2
3,379,526 - -0.2
3,379,526 - +0.1
3,379,562 + -0.6
3,379,608 + +0.2
3,379,608 + +0.2
3,379,674 - -0.1
3,379,674 - -0.0
3,379,679 - -1.0
3,379,710 - -0.2
3,379,710 - +0.3
3,379,770 + +0.7
3,379,770 + -0.1
3,379,770 + +0.3
3,379,771 - -0.4
3,379,771 - +0.8
3,379,771 - -0.1
3,379,775 + +0.5
3,379,775 + +0.4
3,379,776 - -2.5
3,379,776 - -0.9
3,379,776 - -1.0
3,379,776 - -1.2
3,379,776 - -0.1
3,379,776 - -0.0
3,379,779 + -0.3
3,379,796 + -0.2
3,379,796 + -0.8
3,379,796 + -0.3
3,379,796 + +0.6
3,379,797 - +0.1
3,380,055 + ECD_03243 0.17 -0.2
3,380,056 - ECD_03243 0.17 +0.1
3,380,089 + ECD_03243 0.20 +0.2
3,380,090 - ECD_03243 0.20 +0.1
3,380,122 + ECD_03243 0.23 -1.5
3,380,123 - ECD_03243 0.23 -0.7
3,380,190 + ECD_03243 0.28 -0.0
3,380,190 + ECD_03243 0.28 +0.7
3,380,191 - ECD_03243 0.28 +0.8
3,380,256 + ECD_03243 0.33 +0.5
3,380,256 + ECD_03243 0.33 -0.8
3,380,257 - ECD_03243 0.33 +0.1
3,380,305 - ECD_03243 0.37 +1.0
3,380,307 + ECD_03243 0.37 -1.0

Or see this region's nucleotide sequence