Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03241 and ECD_03242 are separated by 56 nucleotides ECD_03242 and ECD_03243 are separated by 400 nucleotides
ECD_03241: ECD_03241 - 3-dehydroquinate synthase, at 3,377,776 to 3,378,864
_03241
ECD_03242: ECD_03242 - shikimate kinase I, at 3,378,921 to 3,379,442
_03242
ECD_03243: ECD_03243 - DNA catabolic putative fimbrial transporter, at 3,379,843 to 3,381,081
_03243
Position (kb)
3378
3379
3380 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3377.922 kb on - strand, within ECD_03241 at 3377.984 kb on - strand, within ECD_03241 at 3377.986 kb on - strand, within ECD_03241 at 3377.986 kb on - strand, within ECD_03241 at 3377.986 kb on - strand, within ECD_03241 at 3377.989 kb on - strand, within ECD_03241 at 3378.077 kb on - strand, within ECD_03241 at 3378.077 kb on - strand, within ECD_03241 at 3378.211 kb on - strand, within ECD_03241 at 3378.211 kb on - strand, within ECD_03241 at 3378.294 kb on + strand, within ECD_03241 at 3378.393 kb on - strand, within ECD_03241 at 3378.472 kb on + strand, within ECD_03241 at 3378.548 kb on - strand, within ECD_03241 at 3378.573 kb on + strand, within ECD_03241 at 3378.574 kb on - strand, within ECD_03241 at 3378.639 kb on + strand, within ECD_03241 at 3378.799 kb on - strand at 3378.831 kb on + strand at 3378.831 kb on + strand at 3378.832 kb on - strand at 3378.832 kb on - strand at 3378.832 kb on - strand at 3378.832 kb on - strand at 3378.832 kb on - strand at 3378.832 kb on - strand at 3378.847 kb on - strand at 3378.886 kb on - strand at 3378.886 kb on - strand at 3378.886 kb on - strand at 3378.886 kb on - strand at 3378.886 kb on - strand at 3378.886 kb on - strand at 3378.906 kb on + strand at 3378.907 kb on - strand at 3378.907 kb on - strand at 3378.907 kb on - strand at 3378.907 kb on - strand at 3378.907 kb on - strand at 3378.908 kb on + strand at 3378.909 kb on - strand at 3378.909 kb on - strand at 3378.909 kb on - strand at 3378.909 kb on - strand at 3378.910 kb on + strand at 3378.911 kb on - strand at 3378.911 kb on - strand at 3378.911 kb on - strand at 3378.922 kb on + strand at 3378.923 kb on - strand at 3378.944 kb on + strand at 3378.945 kb on - strand at 3379.013 kb on - strand, within ECD_03242 at 3379.013 kb on - strand, within ECD_03242 at 3379.013 kb on - strand, within ECD_03242 at 3379.205 kb on + strand, within ECD_03242 at 3379.425 kb on - strand at 3379.455 kb on - strand at 3379.455 kb on - strand at 3379.455 kb on - strand at 3379.455 kb on - strand at 3379.457 kb on + strand at 3379.457 kb on + strand at 3379.458 kb on - strand at 3379.458 kb on - strand at 3379.458 kb on - strand at 3379.477 kb on - strand at 3379.526 kb on - strand at 3379.526 kb on - strand at 3379.562 kb on + strand at 3379.608 kb on + strand at 3379.608 kb on + strand at 3379.674 kb on - strand at 3379.674 kb on - strand at 3379.679 kb on - strand at 3379.710 kb on - strand at 3379.710 kb on - strand at 3379.770 kb on + strand at 3379.770 kb on + strand at 3379.770 kb on + strand at 3379.771 kb on - strand at 3379.771 kb on - strand at 3379.771 kb on - strand at 3379.775 kb on + strand at 3379.775 kb on + strand at 3379.776 kb on - strand at 3379.776 kb on - strand at 3379.776 kb on - strand at 3379.776 kb on - strand at 3379.776 kb on - strand at 3379.776 kb on - strand at 3379.779 kb on + strand at 3379.796 kb on + strand at 3379.796 kb on + strand at 3379.796 kb on + strand at 3379.796 kb on + strand at 3379.797 kb on - strand at 3380.055 kb on + strand, within ECD_03243 at 3380.056 kb on - strand, within ECD_03243 at 3380.089 kb on + strand, within ECD_03243 at 3380.090 kb on - strand, within ECD_03243 at 3380.122 kb on + strand, within ECD_03243 at 3380.123 kb on - strand, within ECD_03243 at 3380.190 kb on + strand, within ECD_03243 at 3380.190 kb on + strand, within ECD_03243 at 3380.191 kb on - strand, within ECD_03243 at 3380.256 kb on + strand, within ECD_03243 at 3380.256 kb on + strand, within ECD_03243 at 3380.257 kb on - strand, within ECD_03243 at 3380.305 kb on - strand, within ECD_03243 at 3380.307 kb on + strand, within ECD_03243
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,377,922 - ECD_03241 0.13 +0.6 3,377,984 - ECD_03241 0.19 +1.8 3,377,986 - ECD_03241 0.19 -1.5 3,377,986 - ECD_03241 0.19 +0.5 3,377,986 - ECD_03241 0.19 +0.3 3,377,989 - ECD_03241 0.20 +0.4 3,378,077 - ECD_03241 0.28 +1.0 3,378,077 - ECD_03241 0.28 +0.1 3,378,211 - ECD_03241 0.40 +0.7 3,378,211 - ECD_03241 0.40 -0.1 3,378,294 + ECD_03241 0.48 +0.2 3,378,393 - ECD_03241 0.57 +0.5 3,378,472 + ECD_03241 0.64 +0.3 3,378,548 - ECD_03241 0.71 -2.6 3,378,573 + ECD_03241 0.73 -1.2 3,378,574 - ECD_03241 0.73 -0.5 3,378,639 + ECD_03241 0.79 -1.3 3,378,799 - +0.5 3,378,831 + -0.5 3,378,831 + -0.8 3,378,832 - +0.9 3,378,832 - +0.5 3,378,832 - -0.9 3,378,832 - -0.8 3,378,832 - -0.6 3,378,832 - +0.7 3,378,847 - -1.8 3,378,886 - +0.2 3,378,886 - +1.0 3,378,886 - +0.2 3,378,886 - -0.5 3,378,886 - -1.5 3,378,886 - -0.8 3,378,906 + -0.6 3,378,907 - +0.5 3,378,907 - +0.2 3,378,907 - +0.5 3,378,907 - +1.2 3,378,907 - -0.8 3,378,908 + +0.9 3,378,909 - +0.1 3,378,909 - +0.1 3,378,909 - +0.9 3,378,909 - +1.0 3,378,910 + +0.2 3,378,911 - -0.3 3,378,911 - +0.4 3,378,911 - -0.7 3,378,922 + +1.0 3,378,923 - +1.0 3,378,944 + +1.5 3,378,945 - -0.3 3,379,013 - ECD_03242 0.18 -1.8 3,379,013 - ECD_03242 0.18 -1.0 3,379,013 - ECD_03242 0.18 -0.5 3,379,205 + ECD_03242 0.54 -0.8 3,379,425 - -0.7 3,379,455 - +1.4 3,379,455 - -0.2 3,379,455 - -1.0 3,379,455 - -0.3 3,379,457 + -0.0 3,379,457 + -0.5 3,379,458 - +0.0 3,379,458 - -1.0 3,379,458 - -0.6 3,379,477 - +0.2 3,379,526 - -0.2 3,379,526 - +0.1 3,379,562 + -0.6 3,379,608 + +0.2 3,379,608 + +0.2 3,379,674 - -0.1 3,379,674 - -0.0 3,379,679 - -1.0 3,379,710 - -0.2 3,379,710 - +0.3 3,379,770 + +0.7 3,379,770 + -0.1 3,379,770 + +0.3 3,379,771 - -0.4 3,379,771 - +0.8 3,379,771 - -0.1 3,379,775 + +0.5 3,379,775 + +0.4 3,379,776 - -2.5 3,379,776 - -0.9 3,379,776 - -1.0 3,379,776 - -1.2 3,379,776 - -0.1 3,379,776 - -0.0 3,379,779 + -0.3 3,379,796 + -0.2 3,379,796 + -0.8 3,379,796 + -0.3 3,379,796 + +0.6 3,379,797 - +0.1 3,380,055 + ECD_03243 0.17 -0.2 3,380,056 - ECD_03243 0.17 +0.1 3,380,089 + ECD_03243 0.20 +0.2 3,380,090 - ECD_03243 0.20 +0.1 3,380,122 + ECD_03243 0.23 -1.5 3,380,123 - ECD_03243 0.23 -0.7 3,380,190 + ECD_03243 0.28 -0.0 3,380,190 + ECD_03243 0.28 +0.7 3,380,191 - ECD_03243 0.28 +0.8 3,380,256 + ECD_03243 0.33 +0.5 3,380,256 + ECD_03243 0.33 -0.8 3,380,257 - ECD_03243 0.33 +0.1 3,380,305 - ECD_03243 0.37 +1.0 3,380,307 + ECD_03243 0.37 -1.0
Or see this region's nucleotide sequence