Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02472 and ECD_02473 are separated by 55 nucleotides ECD_02473 and ECD_02474 are separated by 304 nucleotides ECD_02474 and ECD_02475 are separated by 47 nucleotides
ECD_02472: ECD_02472 - cysteine and O-acetylserine exporter, at 2,582,023 to 2,582,610
_02472
ECD_02473: ECD_02473 - autonomous glycyl radical cofactor, at 2,582,666 to 2,583,049
_02473
ECD_02474: ECD_02474 - uracil-DNA-glycosylase, at 2,583,354 to 2,584,043
_02474
ECD_02475: ECD_02475 - putative methyltransferase, at 2,584,091 to 2,585,128
_02475
Position (kb)
2583
2584
2585 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2582.389 kb on + strand, within ECD_02472 at 2582.390 kb on - strand, within ECD_02472 at 2582.543 kb on - strand, within ECD_02472 at 2582.595 kb on - strand at 2582.649 kb on - strand at 2582.661 kb on - strand at 2582.661 kb on - strand at 2582.668 kb on - strand at 2582.789 kb on - strand, within ECD_02473 at 2582.913 kb on - strand, within ECD_02473 at 2583.044 kb on - strand at 2583.128 kb on - strand at 2583.129 kb on + strand at 2583.129 kb on + strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.130 kb on - strand at 2583.131 kb on + strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.132 kb on - strand at 2583.318 kb on + strand at 2583.323 kb on + strand at 2583.627 kb on - strand, within ECD_02474 at 2583.630 kb on + strand, within ECD_02474 at 2583.630 kb on + strand, within ECD_02474 at 2583.630 kb on + strand, within ECD_02474 at 2583.632 kb on + strand, within ECD_02474 at 2583.647 kb on + strand, within ECD_02474 at 2583.881 kb on + strand, within ECD_02474 at 2584.022 kb on - strand at 2584.024 kb on + strand at 2584.231 kb on - strand, within ECD_02475 at 2584.231 kb on - strand, within ECD_02475 at 2584.511 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475 at 2584.669 kb on - strand, within ECD_02475
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 2,582,389 + ECD_02472 0.62 -0.7 2,582,390 - ECD_02472 0.62 -1.5 2,582,543 - ECD_02472 0.88 +1.0 2,582,595 - +0.4 2,582,649 - -0.1 2,582,661 - -1.1 2,582,661 - -2.8 2,582,668 - -0.1 2,582,789 - ECD_02473 0.32 +0.7 2,582,913 - ECD_02473 0.64 -0.6 2,583,044 - -0.1 2,583,128 - +1.0 2,583,129 + -0.1 2,583,129 + +0.4 2,583,130 - +0.4 2,583,130 - +0.6 2,583,130 - +0.6 2,583,130 - -0.2 2,583,130 - +1.8 2,583,130 - +0.2 2,583,131 + -1.5 2,583,132 - -0.1 2,583,132 - +0.4 2,583,132 - +0.5 2,583,132 - +0.1 2,583,132 - -0.4 2,583,318 + +0.4 2,583,323 + +0.4 2,583,627 - ECD_02474 0.40 +1.4 2,583,630 + ECD_02474 0.40 -0.6 2,583,630 + ECD_02474 0.40 -0.0 2,583,630 + ECD_02474 0.40 +0.5 2,583,632 + ECD_02474 0.40 -0.5 2,583,647 + ECD_02474 0.42 +0.4 2,583,881 + ECD_02474 0.76 +0.7 2,584,022 - -0.4 2,584,024 + -0.4 2,584,231 - ECD_02475 0.13 -0.3 2,584,231 - ECD_02475 0.13 -1.0 2,584,511 - ECD_02475 0.40 -0.0 2,584,669 - ECD_02475 0.56 -1.2 2,584,669 - ECD_02475 0.56 +0.6 2,584,669 - ECD_02475 0.56 -0.7
Or see this region's nucleotide sequence