Strain Fitness in Escherichia coli BL21 around ECD_02301

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02299 and ECD_02300 are separated by 114 nucleotidesECD_02300 and ECD_02301 are separated by 140 nucleotidesECD_02301 and ECD_02302 are separated by 335 nucleotides ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772 _02299 ECD_02300: ECD_02300 - DUF2502 family putative periplasmic protein, at 2,388,887 to 2,389,213 _02300 ECD_02301: ECD_02301 - manganese/divalent cation transporter, at 2,389,354 to 2,390,592 _02301 ECD_02302: ECD_02302 - nucleoside (except guanosine) transporter, at 2,390,928 to 2,392,130 _02302 Position (kb) 2389 2390 2391Strain fitness (log2 ratio) -2 -1 0 1at 2388.417 kb on - strand, within ECD_02299at 2388.437 kb on - strand, within ECD_02299at 2388.705 kb on + strandat 2388.706 kb on - strandat 2388.708 kb on + strandat 2388.709 kb on - strandat 2388.963 kb on + strand, within ECD_02300at 2389.103 kb on + strand, within ECD_02300at 2389.133 kb on + strand, within ECD_02300at 2389.263 kb on - strandat 2389.355 kb on + strandat 2389.356 kb on - strandat 2389.390 kb on - strandat 2389.564 kb on + strand, within ECD_02301at 2389.767 kb on - strand, within ECD_02301at 2389.925 kb on - strand, within ECD_02301at 2389.925 kb on - strand, within ECD_02301at 2389.953 kb on - strand, within ECD_02301at 2390.091 kb on - strand, within ECD_02301at 2390.568 kb on + strandat 2390.568 kb on + strandat 2390.604 kb on - strandat 2390.664 kb on + strandat 2390.701 kb on + strandat 2390.707 kb on + strandat 2390.790 kb on - strandat 2390.883 kb on + strandat 2390.883 kb on + strandat 2390.928 kb on - strandat 2391.389 kb on + strand, within ECD_02302at 2391.422 kb on + strand, within ECD_02302at 2391.461 kb on + strand, within ECD_02302at 2391.461 kb on + strand, within ECD_02302at 2391.461 kb on + strand, within ECD_02302at 2391.461 kb on + strand, within ECD_02302at 2391.461 kb on + strand, within ECD_02302at 2391.480 kb on + strand, within ECD_02302at 2391.480 kb on + strand, within ECD_02302at 2391.480 kb on + strand, within ECD_02302at 2391.481 kb on - strand, within ECD_02302

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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2,388,417 - ECD_02299 0.72 -0.3
2,388,437 - ECD_02299 0.73 -0.0
2,388,705 + +0.5
2,388,706 - +0.8
2,388,708 + -0.0
2,388,709 - +1.3
2,388,963 + ECD_02300 0.23 -0.3
2,389,103 + ECD_02300 0.66 +0.1
2,389,133 + ECD_02300 0.75 -0.3
2,389,263 - +1.0
2,389,355 + -0.2
2,389,356 - +1.3
2,389,390 - +0.5
2,389,564 + ECD_02301 0.17 -2.1
2,389,767 - ECD_02301 0.33 -0.1
2,389,925 - ECD_02301 0.46 -2.0
2,389,925 - ECD_02301 0.46 -0.3
2,389,953 - ECD_02301 0.48 -0.2
2,390,091 - ECD_02301 0.59 -0.6
2,390,568 + +1.4
2,390,568 + +0.8
2,390,604 - +0.3
2,390,664 + -1.5
2,390,701 + +0.5
2,390,707 + -0.7
2,390,790 - -0.5
2,390,883 + -0.7
2,390,883 + -0.6
2,390,928 - -0.4
2,391,389 + ECD_02302 0.38 -0.1
2,391,422 + ECD_02302 0.41 +0.6
2,391,461 + ECD_02302 0.44 -0.6
2,391,461 + ECD_02302 0.44 -0.5
2,391,461 + ECD_02302 0.44 +0.0
2,391,461 + ECD_02302 0.44 +0.6
2,391,461 + ECD_02302 0.44 -0.4
2,391,480 + ECD_02302 0.46 -0.7
2,391,480 + ECD_02302 0.46 -0.2
2,391,480 + ECD_02302 0.46 +0.6
2,391,481 - ECD_02302 0.46 -2.4

Or see this region's nucleotide sequence