Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02299 and ECD_02300 are separated by 114 nucleotides ECD_02300 and ECD_02301 are separated by 140 nucleotides ECD_02301 and ECD_02302 are separated by 335 nucleotides
ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772
_02299
ECD_02300: ECD_02300 - DUF2502 family putative periplasmic protein, at 2,388,887 to 2,389,213
_02300
ECD_02301: ECD_02301 - manganese/divalent cation transporter, at 2,389,354 to 2,390,592
_02301
ECD_02302: ECD_02302 - nucleoside (except guanosine) transporter, at 2,390,928 to 2,392,130
_02302
Position (kb)
2389
2390
2391 Strain fitness (log2 ratio)
-2
-1
0
1 at 2388.417 kb on - strand, within ECD_02299 at 2388.437 kb on - strand, within ECD_02299 at 2388.705 kb on + strand at 2388.706 kb on - strand at 2388.708 kb on + strand at 2388.709 kb on - strand at 2388.963 kb on + strand, within ECD_02300 at 2389.103 kb on + strand, within ECD_02300 at 2389.133 kb on + strand, within ECD_02300 at 2389.263 kb on - strand at 2389.355 kb on + strand at 2389.356 kb on - strand at 2389.390 kb on - strand at 2389.564 kb on + strand, within ECD_02301 at 2389.767 kb on - strand, within ECD_02301 at 2389.925 kb on - strand, within ECD_02301 at 2389.925 kb on - strand, within ECD_02301 at 2389.953 kb on - strand, within ECD_02301 at 2390.091 kb on - strand, within ECD_02301 at 2390.568 kb on + strand at 2390.568 kb on + strand at 2390.604 kb on - strand at 2390.664 kb on + strand at 2390.701 kb on + strand at 2390.707 kb on + strand at 2390.790 kb on - strand at 2390.883 kb on + strand at 2390.883 kb on + strand at 2390.928 kb on - strand at 2391.389 kb on + strand, within ECD_02302 at 2391.422 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.461 kb on + strand, within ECD_02302 at 2391.480 kb on + strand, within ECD_02302 at 2391.480 kb on + strand, within ECD_02302 at 2391.480 kb on + strand, within ECD_02302 at 2391.481 kb on - strand, within ECD_02302
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 2,388,417 - ECD_02299 0.72 -0.3 2,388,437 - ECD_02299 0.73 -0.0 2,388,705 + +0.5 2,388,706 - +0.8 2,388,708 + -0.0 2,388,709 - +1.3 2,388,963 + ECD_02300 0.23 -0.3 2,389,103 + ECD_02300 0.66 +0.1 2,389,133 + ECD_02300 0.75 -0.3 2,389,263 - +1.0 2,389,355 + -0.2 2,389,356 - +1.3 2,389,390 - +0.5 2,389,564 + ECD_02301 0.17 -2.1 2,389,767 - ECD_02301 0.33 -0.1 2,389,925 - ECD_02301 0.46 -2.0 2,389,925 - ECD_02301 0.46 -0.3 2,389,953 - ECD_02301 0.48 -0.2 2,390,091 - ECD_02301 0.59 -0.6 2,390,568 + +1.4 2,390,568 + +0.8 2,390,604 - +0.3 2,390,664 + -1.5 2,390,701 + +0.5 2,390,707 + -0.7 2,390,790 - -0.5 2,390,883 + -0.7 2,390,883 + -0.6 2,390,928 - -0.4 2,391,389 + ECD_02302 0.38 -0.1 2,391,422 + ECD_02302 0.41 +0.6 2,391,461 + ECD_02302 0.44 -0.6 2,391,461 + ECD_02302 0.44 -0.5 2,391,461 + ECD_02302 0.44 +0.0 2,391,461 + ECD_02302 0.44 +0.6 2,391,461 + ECD_02302 0.44 -0.4 2,391,480 + ECD_02302 0.46 -0.7 2,391,480 + ECD_02302 0.46 -0.2 2,391,480 + ECD_02302 0.46 +0.6 2,391,481 - ECD_02302 0.46 -2.4
Or see this region's nucleotide sequence