Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02170 and ECD_02171 are separated by 40 nucleotides ECD_02171 and ECD_02172 are separated by 17 nucleotides ECD_02172 and ECD_02173 are separated by 56 nucleotides
ECD_02170: ECD_02170 - transposase_31 family protein, at 2,247,273 to 2,248,175
_02170
ECD_02171: ECD_02171 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,248,216 to 2,249,019
_02171
ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326
_02172
ECD_02173: ECD_02173 - L-rhamnonate dehydratase, at 2,250,383 to 2,251,588
_02173
Position (kb)
2249
2250
2251 Strain fitness (log2 ratio)
-1
0
1 at 2248.058 kb on + strand, within ECD_02170 at 2248.142 kb on - strand at 2248.221 kb on - strand at 2248.258 kb on - strand at 2248.771 kb on - strand, within ECD_02171 at 2248.932 kb on - strand, within ECD_02171 at 2248.932 kb on - strand, within ECD_02171 at 2248.932 kb on - strand, within ECD_02171 at 2249.009 kb on - strand at 2249.034 kb on + strand at 2249.034 kb on + strand at 2249.038 kb on + strand at 2249.039 kb on - strand at 2249.599 kb on - strand, within ECD_02172 at 2249.599 kb on - strand, within ECD_02172 at 2249.891 kb on - strand, within ECD_02172 at 2249.891 kb on - strand, within ECD_02172 at 2250.072 kb on - strand, within ECD_02172 at 2250.138 kb on + strand, within ECD_02172 at 2250.139 kb on - strand, within ECD_02172 at 2250.343 kb on + strand at 2250.344 kb on - strand at 2250.394 kb on - strand at 2250.823 kb on - strand, within ECD_02173 at 2250.864 kb on + strand, within ECD_02173 at 2250.898 kb on - strand, within ECD_02173 at 2251.225 kb on - strand, within ECD_02173 at 2251.227 kb on + strand, within ECD_02173
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 2,248,058 + ECD_02170 0.87 +0.7 2,248,142 - -0.4 2,248,221 - -0.7 2,248,258 - -0.3 2,248,771 - ECD_02171 0.69 -0.4 2,248,932 - ECD_02171 0.89 +0.5 2,248,932 - ECD_02171 0.89 +1.2 2,248,932 - ECD_02171 0.89 -0.1 2,249,009 - -0.8 2,249,034 + +0.8 2,249,034 + +0.8 2,249,038 + +0.3 2,249,039 - +0.2 2,249,599 - ECD_02172 0.44 -0.8 2,249,599 - ECD_02172 0.44 -0.0 2,249,891 - ECD_02172 0.66 -1.2 2,249,891 - ECD_02172 0.66 -1.2 2,250,072 - ECD_02172 0.80 -0.2 2,250,138 + ECD_02172 0.85 -0.1 2,250,139 - ECD_02172 0.85 +0.4 2,250,343 + +0.0 2,250,344 - -0.8 2,250,394 - -1.3 2,250,823 - ECD_02173 0.36 -1.2 2,250,864 + ECD_02173 0.40 +0.8 2,250,898 - ECD_02173 0.43 +0.7 2,251,225 - ECD_02173 0.70 +0.4 2,251,227 + ECD_02173 0.70 -0.4
Or see this region's nucleotide sequence