Strain Fitness in Escherichia coli BL21 around ECD_02045

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02044 and ECD_02045 are separated by 140 nucleotidesECD_02045 and ECD_02046 are separated by 9 nucleotides ECD_02044: ECD_02044 - methionyl-tRNA synthetase, at 2,089,163 to 2,091,196 _02044 ECD_02045: ECD_02045 - molybdate metabolism regulator, at 2,091,337 to 2,095,131 _02045 ECD_02046: ECD_02046 - DUF4132 domain-containing protein, at 2,095,141 to 2,098,773 _02046 Position (kb) 2091 2092 2093 2094 2095 2096Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2090.803 kb on + strand, within ECD_02044at 2090.836 kb on + strand, within ECD_02044at 2091.194 kb on + strandat 2092.166 kb on + strand, within ECD_02045at 2092.417 kb on + strand, within ECD_02045at 2092.469 kb on + strand, within ECD_02045at 2092.580 kb on + strand, within ECD_02045at 2092.580 kb on + strand, within ECD_02045at 2092.581 kb on - strand, within ECD_02045at 2092.708 kb on - strand, within ECD_02045at 2093.080 kb on + strand, within ECD_02045at 2093.081 kb on - strand, within ECD_02045at 2093.081 kb on - strand, within ECD_02045at 2093.081 kb on - strand, within ECD_02045at 2093.081 kb on - strand, within ECD_02045at 2093.082 kb on + strand, within ECD_02045at 2093.542 kb on - strand, within ECD_02045at 2093.594 kb on - strand, within ECD_02045at 2093.649 kb on - strand, within ECD_02045at 2093.802 kb on - strand, within ECD_02045at 2093.813 kb on + strand, within ECD_02045at 2094.007 kb on - strand, within ECD_02045at 2094.108 kb on - strand, within ECD_02045at 2094.539 kb on - strand, within ECD_02045at 2094.557 kb on + strand, within ECD_02045at 2094.558 kb on - strand, within ECD_02045at 2094.570 kb on + strand, within ECD_02045at 2094.593 kb on - strand, within ECD_02045at 2094.593 kb on - strand, within ECD_02045at 2095.104 kb on + strandat 2095.563 kb on - strand, within ECD_02046at 2095.576 kb on + strand, within ECD_02046at 2095.592 kb on - strand, within ECD_02046at 2095.895 kb on + strand, within ECD_02046at 2095.895 kb on + strand, within ECD_02046at 2095.895 kb on + strand, within ECD_02046at 2095.896 kb on - strand, within ECD_02046at 2095.899 kb on + strand, within ECD_02046at 2095.919 kb on - strand, within ECD_02046at 2096.122 kb on - strand, within ECD_02046at 2096.122 kb on - strand, within ECD_02046

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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2,090,803 + ECD_02044 0.81 +0.4
2,090,836 + ECD_02044 0.82 -0.2
2,091,194 + +0.8
2,092,166 + ECD_02045 0.22 -0.2
2,092,417 + ECD_02045 0.28 +2.7
2,092,469 + ECD_02045 0.30 +0.1
2,092,580 + ECD_02045 0.33 -0.9
2,092,580 + ECD_02045 0.33 +0.6
2,092,581 - ECD_02045 0.33 +0.8
2,092,708 - ECD_02045 0.36 -0.1
2,093,080 + ECD_02045 0.46 -3.5
2,093,081 - ECD_02045 0.46 +0.3
2,093,081 - ECD_02045 0.46 +1.5
2,093,081 - ECD_02045 0.46 +0.1
2,093,081 - ECD_02045 0.46 +1.3
2,093,082 + ECD_02045 0.46 -0.5
2,093,542 - ECD_02045 0.58 +2.6
2,093,594 - ECD_02045 0.59 +0.6
2,093,649 - ECD_02045 0.61 -0.2
2,093,802 - ECD_02045 0.65 -0.4
2,093,813 + ECD_02045 0.65 +0.8
2,094,007 - ECD_02045 0.70 +0.2
2,094,108 - ECD_02045 0.73 -0.9
2,094,539 - ECD_02045 0.84 +0.6
2,094,557 + ECD_02045 0.85 -0.1
2,094,558 - ECD_02045 0.85 +0.6
2,094,570 + ECD_02045 0.85 +0.1
2,094,593 - ECD_02045 0.86 +0.7
2,094,593 - ECD_02045 0.86 +1.1
2,095,104 + -0.8
2,095,563 - ECD_02046 0.12 -0.5
2,095,576 + ECD_02046 0.12 +0.8
2,095,592 - ECD_02046 0.12 +2.6
2,095,895 + ECD_02046 0.21 -0.4
2,095,895 + ECD_02046 0.21 +0.3
2,095,895 + ECD_02046 0.21 +0.1
2,095,896 - ECD_02046 0.21 +0.3
2,095,899 + ECD_02046 0.21 +0.6
2,095,919 - ECD_02046 0.21 -0.5
2,096,122 - ECD_02046 0.27 +2.0
2,096,122 - ECD_02046 0.27 +1.2

Or see this region's nucleotide sequence