Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01205 and ECD_t00025 are separated by 361 nucleotides ECD_t00025 and ECD_t00026 are separated by 209 nucleotides ECD_t00026 and ECD_01208 are separated by 159 nucleotides ECD_01208 and ECD_01209 are separated by 49 nucleotides ECD_01209 and ECD_01210 are separated by 73 nucleotides
ECD_01205: ECD_01205 - nitrate reductase 1, gamma (cytochrome b(NR)) subunit, at 1,273,997 to 1,274,674
_01205
ECD_t00025: ECD_t00025 - tRNA-Tyr, at 1,275,036 to 1,275,120
_t00025
ECD_t00026: ECD_t00026 - tRNA-Tyr, at 1,275,330 to 1,275,414
_t00026
ECD_01208: ECD_01208 - formyltetrahydrofolate hydrolase, at 1,275,574 to 1,276,416
_01208
ECD_01209: ECD_01209 - UPF0225 family protein, at 1,276,466 to 1,276,924
_01209
ECD_01210: ECD_01210 - putative patatin-like family phospholipase, at 1,276,998 to 1,277,942
_01210
Position (kb)
1275
1276
1277 Strain fitness (log2 ratio)
-2
-1
0
1 at 1274.644 kb on + strand at 1274.644 kb on + strand at 1274.645 kb on - strand at 1274.645 kb on - strand at 1274.648 kb on + strand at 1275.144 kb on - strand at 1275.174 kb on - strand at 1275.329 kb on - strand at 1275.329 kb on - strand at 1275.329 kb on - strand at 1275.470 kb on - strand at 1275.696 kb on - strand, within ECD_01208 at 1275.696 kb on - strand, within ECD_01208 at 1275.700 kb on - strand, within ECD_01208 at 1275.762 kb on - strand, within ECD_01208 at 1275.781 kb on - strand, within ECD_01208 at 1276.046 kb on - strand, within ECD_01208 at 1276.066 kb on - strand, within ECD_01208 at 1276.544 kb on - strand, within ECD_01209 at 1276.553 kb on - strand, within ECD_01209 at 1276.553 kb on - strand, within ECD_01209 at 1276.686 kb on - strand, within ECD_01209 at 1276.740 kb on - strand, within ECD_01209 at 1276.867 kb on - strand, within ECD_01209 at 1276.867 kb on - strand, within ECD_01209 at 1276.882 kb on - strand at 1276.885 kb on + strand at 1276.886 kb on - strand at 1276.901 kb on - strand at 1276.975 kb on + strand at 1276.975 kb on + strand at 1276.976 kb on - strand at 1276.976 kb on - strand at 1277.184 kb on + strand, within ECD_01210 at 1277.387 kb on + strand, within ECD_01210
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 1,274,644 + +1.1 1,274,644 + -0.1 1,274,645 - -1.7 1,274,645 - +0.8 1,274,648 + -0.2 1,275,144 - +0.0 1,275,174 - +0.3 1,275,329 - +0.1 1,275,329 - -0.0 1,275,329 - +0.9 1,275,470 - -0.3 1,275,696 - ECD_01208 0.14 -0.1 1,275,696 - ECD_01208 0.14 -0.6 1,275,700 - ECD_01208 0.15 -0.9 1,275,762 - ECD_01208 0.22 +0.7 1,275,781 - ECD_01208 0.25 -1.9 1,276,046 - ECD_01208 0.56 +1.7 1,276,066 - ECD_01208 0.58 +1.3 1,276,544 - ECD_01209 0.17 -0.7 1,276,553 - ECD_01209 0.19 -0.3 1,276,553 - ECD_01209 0.19 +0.1 1,276,686 - ECD_01209 0.48 -1.2 1,276,740 - ECD_01209 0.60 +0.1 1,276,867 - ECD_01209 0.87 +1.3 1,276,867 - ECD_01209 0.87 +0.5 1,276,882 - -1.0 1,276,885 + -0.2 1,276,886 - +1.1 1,276,901 - -0.4 1,276,975 + -0.9 1,276,975 + +1.0 1,276,976 - +1.3 1,276,976 - -0.9 1,277,184 + ECD_01210 0.20 -0.4 1,277,387 + ECD_01210 0.41 -0.5
Or see this region's nucleotide sequence