Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01178 and ECD_01179 are separated by 116 nucleotides ECD_01179 and ECD_01180 are separated by 277 nucleotides ECD_01180 and ECD_01181 are separated by 54 nucleotides
ECD_01178: ECD_01178 - catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated, at 1,244,869 to 1,245,960
_01178
ECD_01179: ECD_01179 - peptidyl-tRNA hydrolase, at 1,246,077 to 1,246,661
_01179
ECD_01180: ECD_01180 - DUF2583 family putative inner membrane protein, at 1,246,939 to 1,247,217
_01180
ECD_01181: ECD_01181 - C4-dicarboxylic acid transporter, at 1,247,272 to 1,248,951
_01181
Position (kb) 1246
1247
1248 Strain fitness (log2 ratio) -1
0
1 at 1246.078 kb on + strand at 1246.755 kb on - strand at 1246.802 kb on + strand at 1246.855 kb on + strand at 1246.876 kb on + strand at 1246.887 kb on + strand at 1246.938 kb on + strand at 1247.046 kb on + strand, within ECD_01180 at 1247.211 kb on + strand at 1247.274 kb on - strand at 1247.594 kb on - strand, within ECD_01181 at 1247.619 kb on + strand, within ECD_01181 at 1247.620 kb on - strand, within ECD_01181 at 1248.045 kb on + strand, within ECD_01181
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 1,246,078 + -1.0 1,246,755 - -0.9 1,246,802 + +0.4 1,246,855 + -0.5 1,246,876 + -0.8 1,246,887 + -0.0 1,246,938 + +0.1 1,247,046 + ECD_01180 0.38 +1.1 1,247,211 + +0.9 1,247,274 - +0.8 1,247,594 - ECD_01181 0.19 +0.5 1,247,619 + ECD_01181 0.21 +0.4 1,247,620 - ECD_01181 0.21 -0.9 1,248,045 + ECD_01181 0.46 +0.1
Or see this region's nucleotide sequence