Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03982 and ECD_04388 are separated by 111 nucleotides ECD_04388 and ECD_03983 overlap by 25 nucleotides
ECD_03982: ECD_03982 - proline/glycine betaine transporter, at 4,237,581 to 4,239,083
_03982
ECD_04388: ECD_04388 - putative membrane-bound BasS regulator, at 4,239,195 to 4,239,284
_04388
ECD_03983: ECD_03983 - sensory histidine kinase in two-component regulatory system with BasR, at 4,239,260 to 4,240,351
_03983
Position (kb)
4239
4240 Strain fitness (log2 ratio)
-2
-1
0
1 at 4238.195 kb on + strand, within ECD_03982 at 4238.196 kb on - strand, within ECD_03982 at 4238.345 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.372 kb on + strand, within ECD_03982 at 4238.373 kb on - strand, within ECD_03982 at 4238.373 kb on - strand, within ECD_03982 at 4238.373 kb on - strand, within ECD_03982 at 4238.404 kb on - strand, within ECD_03982 at 4238.406 kb on + strand, within ECD_03982 at 4238.406 kb on + strand, within ECD_03982 at 4238.406 kb on + strand, within ECD_03982 at 4238.406 kb on + strand, within ECD_03982 at 4238.406 kb on + strand, within ECD_03982 at 4238.407 kb on - strand, within ECD_03982 at 4238.407 kb on - strand, within ECD_03982 at 4238.407 kb on - strand, within ECD_03982 at 4238.407 kb on - strand, within ECD_03982 at 4238.407 kb on - strand, within ECD_03982 at 4238.421 kb on + strand, within ECD_03982 at 4238.421 kb on + strand, within ECD_03982 at 4238.422 kb on - strand, within ECD_03982 at 4238.422 kb on - strand, within ECD_03982 at 4238.422 kb on - strand, within ECD_03982 at 4238.424 kb on - strand, within ECD_03982 at 4238.433 kb on + strand, within ECD_03982 at 4238.454 kb on + strand, within ECD_03982 at 4238.480 kb on + strand, within ECD_03982 at 4238.501 kb on + strand, within ECD_03982 at 4238.566 kb on + strand, within ECD_03982 at 4238.567 kb on - strand, within ECD_03982 at 4238.675 kb on + strand, within ECD_03982 at 4238.675 kb on + strand, within ECD_03982 at 4238.702 kb on + strand, within ECD_03982 at 4238.703 kb on - strand, within ECD_03982 at 4238.759 kb on + strand, within ECD_03982 at 4238.760 kb on - strand, within ECD_03982 at 4238.844 kb on + strand, within ECD_03982 at 4238.858 kb on - strand, within ECD_03982 at 4238.875 kb on + strand, within ECD_03982 at 4238.946 kb on - strand at 4238.985 kb on - strand at 4239.008 kb on + strand at 4239.044 kb on + strand at 4239.081 kb on + strand at 4239.081 kb on + strand at 4239.081 kb on + strand at 4239.117 kb on - strand at 4239.137 kb on - strand at 4239.210 kb on + strand, within ECD_04388 at 4239.261 kb on + strand at 4239.261 kb on + strand at 4239.263 kb on + strand at 4239.368 kb on - strand at 4239.382 kb on + strand, within ECD_03983 at 4239.382 kb on + strand, within ECD_03983 at 4239.421 kb on + strand, within ECD_03983 at 4239.422 kb on - strand, within ECD_03983 at 4239.422 kb on - strand, within ECD_03983 at 4239.521 kb on - strand, within ECD_03983 at 4239.642 kb on - strand, within ECD_03983 at 4239.673 kb on + strand, within ECD_03983 at 4239.674 kb on - strand, within ECD_03983 at 4239.687 kb on + strand, within ECD_03983 at 4239.687 kb on + strand, within ECD_03983 at 4239.688 kb on - strand, within ECD_03983 at 4239.719 kb on + strand, within ECD_03983 at 4239.719 kb on + strand, within ECD_03983 at 4239.720 kb on - strand, within ECD_03983 at 4239.720 kb on - strand, within ECD_03983 at 4239.824 kb on + strand, within ECD_03983 at 4239.825 kb on - strand, within ECD_03983 at 4240.109 kb on + strand, within ECD_03983 at 4240.241 kb on - strand, within ECD_03983
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 4,238,195 + ECD_03982 0.41 +0.5 4,238,196 - ECD_03982 0.41 -0.4 4,238,345 + ECD_03982 0.51 +0.4 4,238,372 + ECD_03982 0.53 -0.6 4,238,372 + ECD_03982 0.53 -0.4 4,238,372 + ECD_03982 0.53 +0.6 4,238,372 + ECD_03982 0.53 -0.9 4,238,372 + ECD_03982 0.53 -1.4 4,238,372 + ECD_03982 0.53 -0.1 4,238,372 + ECD_03982 0.53 -0.6 4,238,372 + ECD_03982 0.53 +0.1 4,238,373 - ECD_03982 0.53 -1.1 4,238,373 - ECD_03982 0.53 +0.5 4,238,373 - ECD_03982 0.53 -0.2 4,238,404 - ECD_03982 0.55 +0.3 4,238,406 + ECD_03982 0.55 +0.1 4,238,406 + ECD_03982 0.55 -0.9 4,238,406 + ECD_03982 0.55 -0.5 4,238,406 + ECD_03982 0.55 -0.5 4,238,406 + ECD_03982 0.55 +0.0 4,238,407 - ECD_03982 0.55 +0.6 4,238,407 - ECD_03982 0.55 -0.5 4,238,407 - ECD_03982 0.55 -0.6 4,238,407 - ECD_03982 0.55 +0.1 4,238,407 - ECD_03982 0.55 -1.1 4,238,421 + ECD_03982 0.56 +1.0 4,238,421 + ECD_03982 0.56 -0.1 4,238,422 - ECD_03982 0.56 +0.5 4,238,422 - ECD_03982 0.56 -0.7 4,238,422 - ECD_03982 0.56 +1.0 4,238,424 - ECD_03982 0.56 +0.2 4,238,433 + ECD_03982 0.57 +0.5 4,238,454 + ECD_03982 0.58 +0.6 4,238,480 + ECD_03982 0.60 -0.1 4,238,501 + ECD_03982 0.61 -0.1 4,238,566 + ECD_03982 0.66 -0.4 4,238,567 - ECD_03982 0.66 +0.4 4,238,675 + ECD_03982 0.73 -0.0 4,238,675 + ECD_03982 0.73 +0.2 4,238,702 + ECD_03982 0.75 +0.6 4,238,703 - ECD_03982 0.75 +0.2 4,238,759 + ECD_03982 0.78 +0.2 4,238,760 - ECD_03982 0.78 -0.8 4,238,844 + ECD_03982 0.84 +0.9 4,238,858 - ECD_03982 0.85 -0.7 4,238,875 + ECD_03982 0.86 +0.2 4,238,946 - -0.1 4,238,985 - -0.4 4,239,008 + -0.1 4,239,044 + -0.0 4,239,081 + +0.3 4,239,081 + +1.1 4,239,081 + -0.2 4,239,117 - +0.8 4,239,137 - -0.8 4,239,210 + ECD_04388 0.17 +0.7 4,239,261 + -0.3 4,239,261 + -1.0 4,239,263 + +0.0 4,239,368 - -0.6 4,239,382 + ECD_03983 0.11 +0.3 4,239,382 + ECD_03983 0.11 -1.0 4,239,421 + ECD_03983 0.15 -0.1 4,239,422 - ECD_03983 0.15 -0.6 4,239,422 - ECD_03983 0.15 -0.0 4,239,521 - ECD_03983 0.24 +1.1 4,239,642 - ECD_03983 0.35 -0.4 4,239,673 + ECD_03983 0.38 -0.1 4,239,674 - ECD_03983 0.38 -0.7 4,239,687 + ECD_03983 0.39 -0.2 4,239,687 + ECD_03983 0.39 -0.3 4,239,688 - ECD_03983 0.39 +0.3 4,239,719 + ECD_03983 0.42 +0.2 4,239,719 + ECD_03983 0.42 -1.3 4,239,720 - ECD_03983 0.42 +0.1 4,239,720 - ECD_03983 0.42 -0.0 4,239,824 + ECD_03983 0.52 -0.3 4,239,825 - ECD_03983 0.52 -0.7 4,240,109 + ECD_03983 0.78 -0.7 4,240,241 - ECD_03983 0.90 -2.2
Or see this region's nucleotide sequence