Strain Fitness in Escherichia coli BL21 around ECD_04388

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03982 and ECD_04388 are separated by 111 nucleotidesECD_04388 and ECD_03983 overlap by 25 nucleotides ECD_03982: ECD_03982 - proline/glycine betaine transporter, at 4,237,581 to 4,239,083 _03982 ECD_04388: ECD_04388 - putative membrane-bound BasS regulator, at 4,239,195 to 4,239,284 _04388 ECD_03983: ECD_03983 - sensory histidine kinase in two-component regulatory system with BasR, at 4,239,260 to 4,240,351 _03983 Position (kb) 4239 4240Strain fitness (log2 ratio) -2 -1 0 1at 4238.195 kb on + strand, within ECD_03982at 4238.196 kb on - strand, within ECD_03982at 4238.345 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.372 kb on + strand, within ECD_03982at 4238.373 kb on - strand, within ECD_03982at 4238.373 kb on - strand, within ECD_03982at 4238.373 kb on - strand, within ECD_03982at 4238.404 kb on - strand, within ECD_03982at 4238.406 kb on + strand, within ECD_03982at 4238.406 kb on + strand, within ECD_03982at 4238.406 kb on + strand, within ECD_03982at 4238.406 kb on + strand, within ECD_03982at 4238.406 kb on + strand, within ECD_03982at 4238.407 kb on - strand, within ECD_03982at 4238.407 kb on - strand, within ECD_03982at 4238.407 kb on - strand, within ECD_03982at 4238.407 kb on - strand, within ECD_03982at 4238.407 kb on - strand, within ECD_03982at 4238.421 kb on + strand, within ECD_03982at 4238.421 kb on + strand, within ECD_03982at 4238.422 kb on - strand, within ECD_03982at 4238.422 kb on - strand, within ECD_03982at 4238.422 kb on - strand, within ECD_03982at 4238.424 kb on - strand, within ECD_03982at 4238.433 kb on + strand, within ECD_03982at 4238.454 kb on + strand, within ECD_03982at 4238.480 kb on + strand, within ECD_03982at 4238.501 kb on + strand, within ECD_03982at 4238.566 kb on + strand, within ECD_03982at 4238.567 kb on - strand, within ECD_03982at 4238.675 kb on + strand, within ECD_03982at 4238.675 kb on + strand, within ECD_03982at 4238.702 kb on + strand, within ECD_03982at 4238.703 kb on - strand, within ECD_03982at 4238.759 kb on + strand, within ECD_03982at 4238.760 kb on - strand, within ECD_03982at 4238.844 kb on + strand, within ECD_03982at 4238.858 kb on - strand, within ECD_03982at 4238.875 kb on + strand, within ECD_03982at 4238.946 kb on - strandat 4238.985 kb on - strandat 4239.008 kb on + strandat 4239.044 kb on + strandat 4239.081 kb on + strandat 4239.081 kb on + strandat 4239.081 kb on + strandat 4239.117 kb on - strandat 4239.137 kb on - strandat 4239.210 kb on + strand, within ECD_04388at 4239.261 kb on + strandat 4239.261 kb on + strandat 4239.263 kb on + strandat 4239.368 kb on - strandat 4239.382 kb on + strand, within ECD_03983at 4239.382 kb on + strand, within ECD_03983at 4239.421 kb on + strand, within ECD_03983at 4239.422 kb on - strand, within ECD_03983at 4239.422 kb on - strand, within ECD_03983at 4239.521 kb on - strand, within ECD_03983at 4239.642 kb on - strand, within ECD_03983at 4239.673 kb on + strand, within ECD_03983at 4239.674 kb on - strand, within ECD_03983at 4239.687 kb on + strand, within ECD_03983at 4239.687 kb on + strand, within ECD_03983at 4239.688 kb on - strand, within ECD_03983at 4239.719 kb on + strand, within ECD_03983at 4239.719 kb on + strand, within ECD_03983at 4239.720 kb on - strand, within ECD_03983at 4239.720 kb on - strand, within ECD_03983at 4239.824 kb on + strand, within ECD_03983at 4239.825 kb on - strand, within ECD_03983at 4240.109 kb on + strand, within ECD_03983at 4240.241 kb on - strand, within ECD_03983

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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4,238,195 + ECD_03982 0.41 +0.5
4,238,196 - ECD_03982 0.41 -0.4
4,238,345 + ECD_03982 0.51 +0.4
4,238,372 + ECD_03982 0.53 -0.6
4,238,372 + ECD_03982 0.53 -0.4
4,238,372 + ECD_03982 0.53 +0.6
4,238,372 + ECD_03982 0.53 -0.9
4,238,372 + ECD_03982 0.53 -1.4
4,238,372 + ECD_03982 0.53 -0.1
4,238,372 + ECD_03982 0.53 -0.6
4,238,372 + ECD_03982 0.53 +0.1
4,238,373 - ECD_03982 0.53 -1.1
4,238,373 - ECD_03982 0.53 +0.5
4,238,373 - ECD_03982 0.53 -0.2
4,238,404 - ECD_03982 0.55 +0.3
4,238,406 + ECD_03982 0.55 +0.1
4,238,406 + ECD_03982 0.55 -0.9
4,238,406 + ECD_03982 0.55 -0.5
4,238,406 + ECD_03982 0.55 -0.5
4,238,406 + ECD_03982 0.55 +0.0
4,238,407 - ECD_03982 0.55 +0.6
4,238,407 - ECD_03982 0.55 -0.5
4,238,407 - ECD_03982 0.55 -0.6
4,238,407 - ECD_03982 0.55 +0.1
4,238,407 - ECD_03982 0.55 -1.1
4,238,421 + ECD_03982 0.56 +1.0
4,238,421 + ECD_03982 0.56 -0.1
4,238,422 - ECD_03982 0.56 +0.5
4,238,422 - ECD_03982 0.56 -0.7
4,238,422 - ECD_03982 0.56 +1.0
4,238,424 - ECD_03982 0.56 +0.2
4,238,433 + ECD_03982 0.57 +0.5
4,238,454 + ECD_03982 0.58 +0.6
4,238,480 + ECD_03982 0.60 -0.1
4,238,501 + ECD_03982 0.61 -0.1
4,238,566 + ECD_03982 0.66 -0.4
4,238,567 - ECD_03982 0.66 +0.4
4,238,675 + ECD_03982 0.73 -0.0
4,238,675 + ECD_03982 0.73 +0.2
4,238,702 + ECD_03982 0.75 +0.6
4,238,703 - ECD_03982 0.75 +0.2
4,238,759 + ECD_03982 0.78 +0.2
4,238,760 - ECD_03982 0.78 -0.8
4,238,844 + ECD_03982 0.84 +0.9
4,238,858 - ECD_03982 0.85 -0.7
4,238,875 + ECD_03982 0.86 +0.2
4,238,946 - -0.1
4,238,985 - -0.4
4,239,008 + -0.1
4,239,044 + -0.0
4,239,081 + +0.3
4,239,081 + +1.1
4,239,081 + -0.2
4,239,117 - +0.8
4,239,137 - -0.8
4,239,210 + ECD_04388 0.17 +0.7
4,239,261 + -0.3
4,239,261 + -1.0
4,239,263 + +0.0
4,239,368 - -0.6
4,239,382 + ECD_03983 0.11 +0.3
4,239,382 + ECD_03983 0.11 -1.0
4,239,421 + ECD_03983 0.15 -0.1
4,239,422 - ECD_03983 0.15 -0.6
4,239,422 - ECD_03983 0.15 -0.0
4,239,521 - ECD_03983 0.24 +1.1
4,239,642 - ECD_03983 0.35 -0.4
4,239,673 + ECD_03983 0.38 -0.1
4,239,674 - ECD_03983 0.38 -0.7
4,239,687 + ECD_03983 0.39 -0.2
4,239,687 + ECD_03983 0.39 -0.3
4,239,688 - ECD_03983 0.39 +0.3
4,239,719 + ECD_03983 0.42 +0.2
4,239,719 + ECD_03983 0.42 -1.3
4,239,720 - ECD_03983 0.42 +0.1
4,239,720 - ECD_03983 0.42 -0.0
4,239,824 + ECD_03983 0.52 -0.3
4,239,825 - ECD_03983 0.52 -0.7
4,240,109 + ECD_03983 0.78 -0.7
4,240,241 - ECD_03983 0.90 -2.2

Or see this region's nucleotide sequence