Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03667 and ECD_03668 overlap by 23 nucleotides ECD_03668 and ECD_03669 are separated by 4 nucleotides ECD_03669 and ECD_03670 are separated by 1 nucleotides
ECD_03667: ECD_03667 - glucose-1-phosphate thymidylyltransferase, at 3,863,848 to 3,864,729
_03667
ECD_03668: ECD_03668 - TDP-fucosamine acetyltransferase, at 3,864,707 to 3,865,381
_03668
ECD_03669: ECD_03669 - TDP-4-oxo-6-deoxy-D-glucose transaminase, at 3,865,386 to 3,866,516
_03669
ECD_03670: ECD_03670 - O-antigen translocase, at 3,866,518 to 3,867,768
_03670
Position (kb)
3865
3866
3867 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3864.439 kb on - strand, within ECD_03667 at 3864.439 kb on - strand, within ECD_03667 at 3864.457 kb on + strand, within ECD_03667 at 3864.458 kb on - strand, within ECD_03667 at 3864.557 kb on + strand, within ECD_03667 at 3864.557 kb on + strand, within ECD_03667 at 3864.785 kb on - strand, within ECD_03668 at 3864.983 kb on - strand, within ECD_03668 at 3865.074 kb on - strand, within ECD_03668 at 3865.074 kb on - strand, within ECD_03668 at 3865.074 kb on - strand, within ECD_03668 at 3865.074 kb on - strand, within ECD_03668 at 3865.132 kb on - strand, within ECD_03668 at 3865.161 kb on - strand, within ECD_03668 at 3865.263 kb on - strand, within ECD_03668 at 3865.263 kb on - strand, within ECD_03668 at 3865.332 kb on + strand at 3865.332 kb on + strand at 3865.333 kb on - strand at 3865.333 kb on - strand at 3865.333 kb on - strand at 3865.431 kb on + strand at 3865.431 kb on + strand at 3865.431 kb on + strand at 3865.431 kb on + strand at 3865.431 kb on + strand at 3865.431 kb on + strand at 3865.433 kb on + strand at 3865.433 kb on + strand at 3865.434 kb on - strand at 3865.434 kb on - strand at 3865.434 kb on - strand at 3865.535 kb on - strand, within ECD_03669 at 3865.621 kb on - strand, within ECD_03669 at 3865.834 kb on + strand, within ECD_03669 at 3865.866 kb on + strand, within ECD_03669 at 3865.910 kb on + strand, within ECD_03669 at 3866.051 kb on + strand, within ECD_03669 at 3866.055 kb on + strand, within ECD_03669 at 3866.056 kb on - strand, within ECD_03669 at 3866.057 kb on + strand, within ECD_03669 at 3866.058 kb on - strand, within ECD_03669 at 3866.069 kb on + strand, within ECD_03669 at 3866.083 kb on - strand, within ECD_03669 at 3866.083 kb on - strand, within ECD_03669 at 3866.176 kb on - strand, within ECD_03669 at 3866.178 kb on + strand, within ECD_03669 at 3866.283 kb on - strand, within ECD_03669 at 3866.307 kb on - strand, within ECD_03669 at 3866.409 kb on + strand at 3866.505 kb on + strand at 3866.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,864,439 - ECD_03667 0.67 +0.8 3,864,439 - ECD_03667 0.67 -0.6 3,864,457 + ECD_03667 0.69 +0.2 3,864,458 - ECD_03667 0.69 -0.0 3,864,557 + ECD_03667 0.80 +0.1 3,864,557 + ECD_03667 0.80 -2.1 3,864,785 - ECD_03668 0.12 -1.1 3,864,983 - ECD_03668 0.41 +0.3 3,865,074 - ECD_03668 0.54 -0.4 3,865,074 - ECD_03668 0.54 -0.4 3,865,074 - ECD_03668 0.54 +0.6 3,865,074 - ECD_03668 0.54 +0.3 3,865,132 - ECD_03668 0.63 +0.9 3,865,161 - ECD_03668 0.67 +1.4 3,865,263 - ECD_03668 0.82 +0.6 3,865,263 - ECD_03668 0.82 -0.7 3,865,332 + -2.0 3,865,332 + -3.0 3,865,333 - -0.7 3,865,333 - -0.6 3,865,333 - -0.1 3,865,431 + -0.3 3,865,431 + -1.4 3,865,431 + -1.2 3,865,431 + -0.6 3,865,431 + +0.2 3,865,431 + +0.0 3,865,433 + -0.2 3,865,433 + +0.4 3,865,434 - +1.2 3,865,434 - +0.6 3,865,434 - -1.5 3,865,535 - ECD_03669 0.13 -0.4 3,865,621 - ECD_03669 0.21 -0.4 3,865,834 + ECD_03669 0.40 -1.5 3,865,866 + ECD_03669 0.42 -0.2 3,865,910 + ECD_03669 0.46 -0.4 3,866,051 + ECD_03669 0.59 -1.2 3,866,055 + ECD_03669 0.59 +0.3 3,866,056 - ECD_03669 0.59 -0.3 3,866,057 + ECD_03669 0.59 -1.6 3,866,058 - ECD_03669 0.59 +1.6 3,866,069 + ECD_03669 0.60 -1.2 3,866,083 - ECD_03669 0.62 -1.0 3,866,083 - ECD_03669 0.62 -0.1 3,866,176 - ECD_03669 0.70 +0.3 3,866,178 + ECD_03669 0.70 -0.6 3,866,283 - ECD_03669 0.79 +0.6 3,866,307 - ECD_03669 0.81 -0.8 3,866,409 + +0.0 3,866,505 + +0.3 3,866,517 + +0.6
Or see this region's nucleotide sequence