Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03502 and ECD_03503 are separated by 290 nucleotides ECD_03503 and ECD_03504 overlap by 4 nucleotides
ECD_03502: ECD_03502 - DNA damage-inducible protein, at 3,684,551 to 3,685,375
_03502
ECD_03503: ECD_03503 - UPF0126 family inner membrane protein, at 3,685,666 to 3,686,283
_03503
ECD_03504: ECD_03504 - DNA ligase, NAD(+)-dependent, at 3,686,280 to 3,687,962
_03504
Position (kb)
3685
3686
3687 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3684.756 kb on + strand, within ECD_03502 at 3684.757 kb on - strand, within ECD_03502 at 3684.760 kb on - strand, within ECD_03502 at 3684.760 kb on - strand, within ECD_03502 at 3684.760 kb on - strand, within ECD_03502 at 3684.807 kb on - strand, within ECD_03502 at 3684.822 kb on + strand, within ECD_03502 at 3684.825 kb on + strand, within ECD_03502 at 3684.826 kb on - strand, within ECD_03502 at 3684.873 kb on - strand, within ECD_03502 at 3684.979 kb on + strand, within ECD_03502 at 3685.041 kb on + strand, within ECD_03502 at 3685.070 kb on + strand, within ECD_03502 at 3685.070 kb on + strand, within ECD_03502 at 3685.081 kb on - strand, within ECD_03502 at 3685.093 kb on + strand, within ECD_03502 at 3685.093 kb on + strand, within ECD_03502 at 3685.142 kb on - strand, within ECD_03502 at 3685.181 kb on - strand, within ECD_03502 at 3685.384 kb on - strand at 3685.419 kb on + strand at 3685.457 kb on + strand at 3685.571 kb on + strand at 3685.571 kb on + strand at 3685.674 kb on - strand at 3685.749 kb on + strand, within ECD_03503 at 3685.761 kb on - strand, within ECD_03503 at 3685.764 kb on + strand, within ECD_03503 at 3685.764 kb on + strand, within ECD_03503 at 3685.765 kb on - strand, within ECD_03503 at 3685.765 kb on - strand, within ECD_03503 at 3685.855 kb on + strand, within ECD_03503 at 3685.855 kb on + strand, within ECD_03503 at 3685.856 kb on - strand, within ECD_03503 at 3685.863 kb on + strand, within ECD_03503 at 3685.883 kb on + strand, within ECD_03503 at 3685.883 kb on + strand, within ECD_03503 at 3685.883 kb on + strand, within ECD_03503 at 3685.907 kb on + strand, within ECD_03503 at 3685.908 kb on - strand, within ECD_03503 at 3685.908 kb on - strand, within ECD_03503 at 3685.915 kb on + strand, within ECD_03503 at 3685.916 kb on - strand, within ECD_03503 at 3685.916 kb on - strand, within ECD_03503 at 3685.969 kb on - strand, within ECD_03503 at 3685.969 kb on - strand, within ECD_03503 at 3685.969 kb on - strand, within ECD_03503 at 3686.013 kb on + strand, within ECD_03503 at 3686.067 kb on + strand, within ECD_03503 at 3686.077 kb on - strand, within ECD_03503 at 3686.110 kb on + strand, within ECD_03503 at 3686.110 kb on + strand, within ECD_03503 at 3686.110 kb on + strand, within ECD_03503 at 3686.110 kb on + strand, within ECD_03503 at 3686.111 kb on - strand, within ECD_03503 at 3686.111 kb on - strand, within ECD_03503 at 3686.144 kb on - strand, within ECD_03503 at 3686.162 kb on - strand, within ECD_03503 at 3686.188 kb on - strand, within ECD_03503 at 3686.188 kb on - strand, within ECD_03503 at 3686.263 kb on + strand at 3686.281 kb on + strand at 3686.282 kb on - strand at 3686.282 kb on - strand at 3686.282 kb on - strand at 3686.424 kb on + strand at 3686.425 kb on - strand at 3686.508 kb on - strand, within ECD_03504 at 3686.520 kb on - strand, within ECD_03504 at 3686.532 kb on - strand, within ECD_03504 at 3686.558 kb on + strand, within ECD_03504 at 3686.586 kb on + strand, within ECD_03504 at 3686.587 kb on - strand, within ECD_03504 at 3686.587 kb on - strand, within ECD_03504 at 3686.587 kb on - strand, within ECD_03504 at 3686.712 kb on + strand, within ECD_03504 at 3686.755 kb on + strand, within ECD_03504 at 3686.756 kb on - strand, within ECD_03504 at 3686.802 kb on - strand, within ECD_03504 at 3686.843 kb on + strand, within ECD_03504 at 3686.983 kb on - strand, within ECD_03504 at 3686.996 kb on + strand, within ECD_03504 at 3686.997 kb on - strand, within ECD_03504 at 3687.050 kb on - strand, within ECD_03504 at 3687.120 kb on + strand, within ECD_03504 at 3687.126 kb on + strand, within ECD_03504 at 3687.126 kb on + strand, within ECD_03504 at 3687.127 kb on - strand, within ECD_03504 at 3687.147 kb on + strand, within ECD_03504 at 3687.148 kb on - strand, within ECD_03504 at 3687.148 kb on - strand, within ECD_03504 at 3687.148 kb on - strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.214 kb on + strand, within ECD_03504 at 3687.215 kb on - strand, within ECD_03504 at 3687.215 kb on - strand, within ECD_03504 at 3687.215 kb on - strand, within ECD_03504 at 3687.215 kb on - strand, within ECD_03504 at 3687.225 kb on + strand, within ECD_03504 at 3687.226 kb on - strand, within ECD_03504 at 3687.231 kb on - strand, within ECD_03504 at 3687.270 kb on + strand, within ECD_03504 at 3687.271 kb on - strand, within ECD_03504 at 3687.271 kb on - strand, within ECD_03504
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 3,684,756 + ECD_03502 0.25 +0.5 3,684,757 - ECD_03502 0.25 +0.3 3,684,760 - ECD_03502 0.25 +0.5 3,684,760 - ECD_03502 0.25 -0.6 3,684,760 - ECD_03502 0.25 -2.0 3,684,807 - ECD_03502 0.31 -0.1 3,684,822 + ECD_03502 0.33 -0.1 3,684,825 + ECD_03502 0.33 +2.1 3,684,826 - ECD_03502 0.33 +0.2 3,684,873 - ECD_03502 0.39 +0.5 3,684,979 + ECD_03502 0.52 +0.3 3,685,041 + ECD_03502 0.59 -0.4 3,685,070 + ECD_03502 0.63 -0.0 3,685,070 + ECD_03502 0.63 +0.7 3,685,081 - ECD_03502 0.64 -0.6 3,685,093 + ECD_03502 0.66 +0.1 3,685,093 + ECD_03502 0.66 -1.0 3,685,142 - ECD_03502 0.72 -0.5 3,685,181 - ECD_03502 0.76 -0.0 3,685,384 - -0.2 3,685,419 + +0.5 3,685,457 + -0.7 3,685,571 + -0.2 3,685,571 + +0.6 3,685,674 - +0.3 3,685,749 + ECD_03503 0.13 +0.8 3,685,761 - ECD_03503 0.15 -0.6 3,685,764 + ECD_03503 0.16 +0.8 3,685,764 + ECD_03503 0.16 +0.2 3,685,765 - ECD_03503 0.16 +0.5 3,685,765 - ECD_03503 0.16 +0.5 3,685,855 + ECD_03503 0.31 +1.0 3,685,855 + ECD_03503 0.31 -0.0 3,685,856 - ECD_03503 0.31 -2.0 3,685,863 + ECD_03503 0.32 +0.1 3,685,883 + ECD_03503 0.35 +0.4 3,685,883 + ECD_03503 0.35 +0.4 3,685,883 + ECD_03503 0.35 -0.0 3,685,907 + ECD_03503 0.39 -0.7 3,685,908 - ECD_03503 0.39 -1.0 3,685,908 - ECD_03503 0.39 +0.1 3,685,915 + ECD_03503 0.40 -0.5 3,685,916 - ECD_03503 0.40 -1.0 3,685,916 - ECD_03503 0.40 -1.0 3,685,969 - ECD_03503 0.49 -1.6 3,685,969 - ECD_03503 0.49 +0.4 3,685,969 - ECD_03503 0.49 +0.5 3,686,013 + ECD_03503 0.56 +0.1 3,686,067 + ECD_03503 0.65 -0.1 3,686,077 - ECD_03503 0.67 +0.4 3,686,110 + ECD_03503 0.72 +0.2 3,686,110 + ECD_03503 0.72 -0.1 3,686,110 + ECD_03503 0.72 +0.2 3,686,110 + ECD_03503 0.72 +1.3 3,686,111 - ECD_03503 0.72 +0.5 3,686,111 - ECD_03503 0.72 +0.5 3,686,144 - ECD_03503 0.77 -0.0 3,686,162 - ECD_03503 0.80 +0.1 3,686,188 - ECD_03503 0.84 +0.2 3,686,188 - ECD_03503 0.84 -1.2 3,686,263 + +0.2 3,686,281 + +0.6 3,686,282 - +0.3 3,686,282 - -0.7 3,686,282 - +0.5 3,686,424 + -0.3 3,686,425 - -1.0 3,686,508 - ECD_03504 0.14 -0.3 3,686,520 - ECD_03504 0.14 +0.4 3,686,532 - ECD_03504 0.15 +0.7 3,686,558 + ECD_03504 0.17 +1.1 3,686,586 + ECD_03504 0.18 +0.2 3,686,587 - ECD_03504 0.18 -0.0 3,686,587 - ECD_03504 0.18 +0.8 3,686,587 - ECD_03504 0.18 -0.3 3,686,712 + ECD_03504 0.26 +1.9 3,686,755 + ECD_03504 0.28 +0.9 3,686,756 - ECD_03504 0.28 +2.0 3,686,802 - ECD_03504 0.31 +0.5 3,686,843 + ECD_03504 0.33 +1.5 3,686,983 - ECD_03504 0.42 -1.3 3,686,996 + ECD_03504 0.43 -0.0 3,686,997 - ECD_03504 0.43 -0.0 3,687,050 - ECD_03504 0.46 -1.0 3,687,120 + ECD_03504 0.50 -0.5 3,687,126 + ECD_03504 0.50 +0.7 3,687,126 + ECD_03504 0.50 +0.7 3,687,127 - ECD_03504 0.50 +1.0 3,687,147 + ECD_03504 0.52 +1.5 3,687,148 - ECD_03504 0.52 +0.3 3,687,148 - ECD_03504 0.52 +0.5 3,687,148 - ECD_03504 0.52 -0.2 3,687,214 + ECD_03504 0.55 -1.1 3,687,214 + ECD_03504 0.55 -0.1 3,687,214 + ECD_03504 0.55 +0.7 3,687,214 + ECD_03504 0.55 +0.0 3,687,214 + ECD_03504 0.55 +0.2 3,687,214 + ECD_03504 0.55 +0.8 3,687,214 + ECD_03504 0.55 +0.4 3,687,215 - ECD_03504 0.56 +0.7 3,687,215 - ECD_03504 0.56 +1.5 3,687,215 - ECD_03504 0.56 +0.5 3,687,215 - ECD_03504 0.56 -1.0 3,687,225 + ECD_03504 0.56 -0.1 3,687,226 - ECD_03504 0.56 -0.2 3,687,231 - ECD_03504 0.57 +0.8 3,687,270 + ECD_03504 0.59 +0.0 3,687,271 - ECD_03504 0.59 +0.5 3,687,271 - ECD_03504 0.59 +0.1
Or see this region's nucleotide sequence