Strain Fitness in Escherichia coli BL21 around ECD_03503

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03502 and ECD_03503 are separated by 290 nucleotidesECD_03503 and ECD_03504 overlap by 4 nucleotides ECD_03502: ECD_03502 - DNA damage-inducible protein, at 3,684,551 to 3,685,375 _03502 ECD_03503: ECD_03503 - UPF0126 family inner membrane protein, at 3,685,666 to 3,686,283 _03503 ECD_03504: ECD_03504 - DNA ligase, NAD(+)-dependent, at 3,686,280 to 3,687,962 _03504 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -2 -1 0 1 2at 3684.756 kb on + strand, within ECD_03502at 3684.757 kb on - strand, within ECD_03502at 3684.760 kb on - strand, within ECD_03502at 3684.760 kb on - strand, within ECD_03502at 3684.760 kb on - strand, within ECD_03502at 3684.807 kb on - strand, within ECD_03502at 3684.822 kb on + strand, within ECD_03502at 3684.825 kb on + strand, within ECD_03502at 3684.826 kb on - strand, within ECD_03502at 3684.873 kb on - strand, within ECD_03502at 3684.979 kb on + strand, within ECD_03502at 3685.041 kb on + strand, within ECD_03502at 3685.070 kb on + strand, within ECD_03502at 3685.070 kb on + strand, within ECD_03502at 3685.081 kb on - strand, within ECD_03502at 3685.093 kb on + strand, within ECD_03502at 3685.093 kb on + strand, within ECD_03502at 3685.142 kb on - strand, within ECD_03502at 3685.181 kb on - strand, within ECD_03502at 3685.384 kb on - strandat 3685.419 kb on + strandat 3685.457 kb on + strandat 3685.571 kb on + strandat 3685.571 kb on + strandat 3685.674 kb on - strandat 3685.749 kb on + strand, within ECD_03503at 3685.761 kb on - strand, within ECD_03503at 3685.764 kb on + strand, within ECD_03503at 3685.764 kb on + strand, within ECD_03503at 3685.765 kb on - strand, within ECD_03503at 3685.765 kb on - strand, within ECD_03503at 3685.855 kb on + strand, within ECD_03503at 3685.855 kb on + strand, within ECD_03503at 3685.856 kb on - strand, within ECD_03503at 3685.863 kb on + strand, within ECD_03503at 3685.883 kb on + strand, within ECD_03503at 3685.883 kb on + strand, within ECD_03503at 3685.883 kb on + strand, within ECD_03503at 3685.907 kb on + strand, within ECD_03503at 3685.908 kb on - strand, within ECD_03503at 3685.908 kb on - strand, within ECD_03503at 3685.915 kb on + strand, within ECD_03503at 3685.916 kb on - strand, within ECD_03503at 3685.916 kb on - strand, within ECD_03503at 3685.969 kb on - strand, within ECD_03503at 3685.969 kb on - strand, within ECD_03503at 3685.969 kb on - strand, within ECD_03503at 3686.013 kb on + strand, within ECD_03503at 3686.067 kb on + strand, within ECD_03503at 3686.077 kb on - strand, within ECD_03503at 3686.110 kb on + strand, within ECD_03503at 3686.110 kb on + strand, within ECD_03503at 3686.110 kb on + strand, within ECD_03503at 3686.110 kb on + strand, within ECD_03503at 3686.111 kb on - strand, within ECD_03503at 3686.111 kb on - strand, within ECD_03503at 3686.144 kb on - strand, within ECD_03503at 3686.162 kb on - strand, within ECD_03503at 3686.188 kb on - strand, within ECD_03503at 3686.188 kb on - strand, within ECD_03503at 3686.263 kb on + strandat 3686.281 kb on + strandat 3686.282 kb on - strandat 3686.282 kb on - strandat 3686.282 kb on - strandat 3686.424 kb on + strandat 3686.425 kb on - strandat 3686.508 kb on - strand, within ECD_03504at 3686.520 kb on - strand, within ECD_03504at 3686.532 kb on - strand, within ECD_03504at 3686.558 kb on + strand, within ECD_03504at 3686.586 kb on + strand, within ECD_03504at 3686.587 kb on - strand, within ECD_03504at 3686.587 kb on - strand, within ECD_03504at 3686.587 kb on - strand, within ECD_03504at 3686.712 kb on + strand, within ECD_03504at 3686.755 kb on + strand, within ECD_03504at 3686.756 kb on - strand, within ECD_03504at 3686.802 kb on - strand, within ECD_03504at 3686.843 kb on + strand, within ECD_03504at 3686.983 kb on - strand, within ECD_03504at 3686.996 kb on + strand, within ECD_03504at 3686.997 kb on - strand, within ECD_03504at 3687.050 kb on - strand, within ECD_03504at 3687.120 kb on + strand, within ECD_03504at 3687.126 kb on + strand, within ECD_03504at 3687.126 kb on + strand, within ECD_03504at 3687.127 kb on - strand, within ECD_03504at 3687.147 kb on + strand, within ECD_03504at 3687.148 kb on - strand, within ECD_03504at 3687.148 kb on - strand, within ECD_03504at 3687.148 kb on - strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.214 kb on + strand, within ECD_03504at 3687.215 kb on - strand, within ECD_03504at 3687.215 kb on - strand, within ECD_03504at 3687.215 kb on - strand, within ECD_03504at 3687.215 kb on - strand, within ECD_03504at 3687.225 kb on + strand, within ECD_03504at 3687.226 kb on - strand, within ECD_03504at 3687.231 kb on - strand, within ECD_03504at 3687.270 kb on + strand, within ECD_03504at 3687.271 kb on - strand, within ECD_03504at 3687.271 kb on - strand, within ECD_03504

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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3,684,756 + ECD_03502 0.25 +0.5
3,684,757 - ECD_03502 0.25 +0.3
3,684,760 - ECD_03502 0.25 +0.5
3,684,760 - ECD_03502 0.25 -0.6
3,684,760 - ECD_03502 0.25 -2.0
3,684,807 - ECD_03502 0.31 -0.1
3,684,822 + ECD_03502 0.33 -0.1
3,684,825 + ECD_03502 0.33 +2.1
3,684,826 - ECD_03502 0.33 +0.2
3,684,873 - ECD_03502 0.39 +0.5
3,684,979 + ECD_03502 0.52 +0.3
3,685,041 + ECD_03502 0.59 -0.4
3,685,070 + ECD_03502 0.63 -0.0
3,685,070 + ECD_03502 0.63 +0.7
3,685,081 - ECD_03502 0.64 -0.6
3,685,093 + ECD_03502 0.66 +0.1
3,685,093 + ECD_03502 0.66 -1.0
3,685,142 - ECD_03502 0.72 -0.5
3,685,181 - ECD_03502 0.76 -0.0
3,685,384 - -0.2
3,685,419 + +0.5
3,685,457 + -0.7
3,685,571 + -0.2
3,685,571 + +0.6
3,685,674 - +0.3
3,685,749 + ECD_03503 0.13 +0.8
3,685,761 - ECD_03503 0.15 -0.6
3,685,764 + ECD_03503 0.16 +0.8
3,685,764 + ECD_03503 0.16 +0.2
3,685,765 - ECD_03503 0.16 +0.5
3,685,765 - ECD_03503 0.16 +0.5
3,685,855 + ECD_03503 0.31 +1.0
3,685,855 + ECD_03503 0.31 -0.0
3,685,856 - ECD_03503 0.31 -2.0
3,685,863 + ECD_03503 0.32 +0.1
3,685,883 + ECD_03503 0.35 +0.4
3,685,883 + ECD_03503 0.35 +0.4
3,685,883 + ECD_03503 0.35 -0.0
3,685,907 + ECD_03503 0.39 -0.7
3,685,908 - ECD_03503 0.39 -1.0
3,685,908 - ECD_03503 0.39 +0.1
3,685,915 + ECD_03503 0.40 -0.5
3,685,916 - ECD_03503 0.40 -1.0
3,685,916 - ECD_03503 0.40 -1.0
3,685,969 - ECD_03503 0.49 -1.6
3,685,969 - ECD_03503 0.49 +0.4
3,685,969 - ECD_03503 0.49 +0.5
3,686,013 + ECD_03503 0.56 +0.1
3,686,067 + ECD_03503 0.65 -0.1
3,686,077 - ECD_03503 0.67 +0.4
3,686,110 + ECD_03503 0.72 +0.2
3,686,110 + ECD_03503 0.72 -0.1
3,686,110 + ECD_03503 0.72 +0.2
3,686,110 + ECD_03503 0.72 +1.3
3,686,111 - ECD_03503 0.72 +0.5
3,686,111 - ECD_03503 0.72 +0.5
3,686,144 - ECD_03503 0.77 -0.0
3,686,162 - ECD_03503 0.80 +0.1
3,686,188 - ECD_03503 0.84 +0.2
3,686,188 - ECD_03503 0.84 -1.2
3,686,263 + +0.2
3,686,281 + +0.6
3,686,282 - +0.3
3,686,282 - -0.7
3,686,282 - +0.5
3,686,424 + -0.3
3,686,425 - -1.0
3,686,508 - ECD_03504 0.14 -0.3
3,686,520 - ECD_03504 0.14 +0.4
3,686,532 - ECD_03504 0.15 +0.7
3,686,558 + ECD_03504 0.17 +1.1
3,686,586 + ECD_03504 0.18 +0.2
3,686,587 - ECD_03504 0.18 -0.0
3,686,587 - ECD_03504 0.18 +0.8
3,686,587 - ECD_03504 0.18 -0.3
3,686,712 + ECD_03504 0.26 +1.9
3,686,755 + ECD_03504 0.28 +0.9
3,686,756 - ECD_03504 0.28 +2.0
3,686,802 - ECD_03504 0.31 +0.5
3,686,843 + ECD_03504 0.33 +1.5
3,686,983 - ECD_03504 0.42 -1.3
3,686,996 + ECD_03504 0.43 -0.0
3,686,997 - ECD_03504 0.43 -0.0
3,687,050 - ECD_03504 0.46 -1.0
3,687,120 + ECD_03504 0.50 -0.5
3,687,126 + ECD_03504 0.50 +0.7
3,687,126 + ECD_03504 0.50 +0.7
3,687,127 - ECD_03504 0.50 +1.0
3,687,147 + ECD_03504 0.52 +1.5
3,687,148 - ECD_03504 0.52 +0.3
3,687,148 - ECD_03504 0.52 +0.5
3,687,148 - ECD_03504 0.52 -0.2
3,687,214 + ECD_03504 0.55 -1.1
3,687,214 + ECD_03504 0.55 -0.1
3,687,214 + ECD_03504 0.55 +0.7
3,687,214 + ECD_03504 0.55 +0.0
3,687,214 + ECD_03504 0.55 +0.2
3,687,214 + ECD_03504 0.55 +0.8
3,687,214 + ECD_03504 0.55 +0.4
3,687,215 - ECD_03504 0.56 +0.7
3,687,215 - ECD_03504 0.56 +1.5
3,687,215 - ECD_03504 0.56 +0.5
3,687,215 - ECD_03504 0.56 -1.0
3,687,225 + ECD_03504 0.56 -0.1
3,687,226 - ECD_03504 0.56 -0.2
3,687,231 - ECD_03504 0.57 +0.8
3,687,270 + ECD_03504 0.59 +0.0
3,687,271 - ECD_03504 0.59 +0.5
3,687,271 - ECD_03504 0.59 +0.1

Or see this region's nucleotide sequence