Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01394 and ECD_04317 are separated by 221 nucleotides ECD_04317 and ECD_01395 are separated by 24 nucleotides ECD_01395 and ECD_01396 are separated by 78 nucleotides ECD_01396 and ECD_01397 are separated by 244 nucleotides
ECD_01394: ECD_01394 - uncharacterized protein, at 1,462,897 to 1,463,127
_01394
ECD_04317: ECD_04317 - mRNA interferase toxin of the HicAB toxin-antitoxin system, at 1,463,349 to 1,463,525
_04317
ECD_01395: ECD_01395 - antitoxin for the HicAB toxin-antitoxin system, at 1,463,550 to 1,463,987
_01395
ECD_01396: ECD_01396 - putative DNA-binding transcriptional regulator and putative aminotransferase, at 1,464,066 to 1,465,472
_01396
ECD_01397: ECD_01397 - putative ABC transporter periplasmic binding protein, at 1,465,717 to 1,466,862
_01397
Position (kb) 1464
1465
1466 Strain fitness (log2 ratio) -1
0
1 at 1463.099 kb on - strand, within ECD_01394 at 1463.288 kb on + strand at 1463.325 kb on + strand at 1463.327 kb on + strand at 1463.613 kb on + strand, within ECD_01395 at 1464.228 kb on + strand, within ECD_01396 at 1465.125 kb on + strand, within ECD_01396 at 1465.307 kb on - strand, within ECD_01396 at 1466.284 kb on + strand, within ECD_01397
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 1,463,099 - ECD_01394 0.87 -0.2 1,463,288 + +1.5 1,463,325 + -0.6 1,463,327 + -0.7 1,463,613 + ECD_01395 0.14 +0.0 1,464,228 + ECD_01396 0.12 +0.0 1,465,125 + ECD_01396 0.75 +0.0 1,465,307 - ECD_01396 0.88 +1.4 1,466,284 + ECD_01397 0.49 +0.3
Or see this region's nucleotide sequence