Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00975 and ECD_00976 overlap by 4 nucleotides ECD_00976 and ECD_00977 are separated by 18 nucleotides ECD_00977 and ECD_00978 overlap by 4 nucleotides
ECD_00975: ECD_00975 - hydrogenase 1, small subunit, at 1,037,228 to 1,038,346
_00975
ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136
_00976
ECD_00977: ECD_00977 - hydrogenase 1, b-type cytochrome subunit, at 1,040,155 to 1,040,862
_00977
ECD_00978: ECD_00978 - hydrogenase 1 maturation protease, at 1,040,859 to 1,041,446
_00978
Position (kb) 1038
1039
1040
1041 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1037.391 kb on + strand, within ECD_00975 at 1037.501 kb on - strand, within ECD_00975 at 1037.562 kb on - strand, within ECD_00975 at 1037.593 kb on + strand, within ECD_00975 at 1037.842 kb on + strand, within ECD_00975 at 1037.843 kb on - strand, within ECD_00975 at 1037.843 kb on - strand, within ECD_00975 at 1037.846 kb on + strand, within ECD_00975 at 1037.846 kb on + strand, within ECD_00975 at 1037.847 kb on - strand, within ECD_00975 at 1037.847 kb on - strand, within ECD_00975 at 1037.906 kb on + strand, within ECD_00975 at 1037.907 kb on - strand, within ECD_00975 at 1037.907 kb on - strand, within ECD_00975 at 1037.907 kb on - strand, within ECD_00975 at 1038.042 kb on - strand, within ECD_00975 at 1038.042 kb on - strand, within ECD_00975 at 1038.042 kb on - strand, within ECD_00975 at 1038.290 kb on - strand at 1038.301 kb on + strand at 1038.522 kb on - strand at 1038.579 kb on + strand, within ECD_00976 at 1038.630 kb on + strand, within ECD_00976 at 1038.633 kb on + strand, within ECD_00976 at 1038.634 kb on - strand, within ECD_00976 at 1038.655 kb on - strand, within ECD_00976 at 1038.669 kb on + strand, within ECD_00976 at 1038.746 kb on + strand, within ECD_00976 at 1038.747 kb on - strand, within ECD_00976 at 1039.131 kb on + strand, within ECD_00976 at 1039.237 kb on - strand, within ECD_00976 at 1039.252 kb on + strand, within ECD_00976 at 1039.462 kb on + strand, within ECD_00976 at 1040.189 kb on - strand at 1040.309 kb on - strand, within ECD_00977 at 1040.309 kb on - strand, within ECD_00977 at 1040.317 kb on + strand, within ECD_00977 at 1040.318 kb on - strand, within ECD_00977 at 1040.318 kb on - strand, within ECD_00977 at 1040.319 kb on + strand, within ECD_00977 at 1040.488 kb on + strand, within ECD_00977 at 1040.522 kb on + strand, within ECD_00977 at 1040.752 kb on + strand, within ECD_00977 at 1040.844 kb on + strand at 1040.971 kb on - strand, within ECD_00978 at 1040.993 kb on + strand, within ECD_00978 at 1040.993 kb on + strand, within ECD_00978 at 1041.093 kb on + strand, within ECD_00978
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 1,037,391 + ECD_00975 0.15 -1.6 1,037,501 - ECD_00975 0.24 +0.1 1,037,562 - ECD_00975 0.30 -1.5 1,037,593 + ECD_00975 0.33 -0.8 1,037,842 + ECD_00975 0.55 -0.2 1,037,843 - ECD_00975 0.55 -0.4 1,037,843 - ECD_00975 0.55 +0.6 1,037,846 + ECD_00975 0.55 -0.9 1,037,846 + ECD_00975 0.55 +0.7 1,037,847 - ECD_00975 0.55 +0.3 1,037,847 - ECD_00975 0.55 -1.0 1,037,906 + ECD_00975 0.61 +1.0 1,037,907 - ECD_00975 0.61 +0.5 1,037,907 - ECD_00975 0.61 -0.9 1,037,907 - ECD_00975 0.61 +0.8 1,038,042 - ECD_00975 0.73 -0.1 1,038,042 - ECD_00975 0.73 -1.9 1,038,042 - ECD_00975 0.73 -0.9 1,038,290 - +0.5 1,038,301 + +0.6 1,038,522 - +0.5 1,038,579 + ECD_00976 0.13 -0.1 1,038,630 + ECD_00976 0.16 -0.6 1,038,633 + ECD_00976 0.16 +0.5 1,038,634 - ECD_00976 0.16 +0.5 1,038,655 - ECD_00976 0.17 +0.8 1,038,669 + ECD_00976 0.18 -0.4 1,038,746 + ECD_00976 0.22 +0.5 1,038,747 - ECD_00976 0.23 -0.9 1,039,131 + ECD_00976 0.44 +1.0 1,039,237 - ECD_00976 0.50 +0.5 1,039,252 + ECD_00976 0.51 +1.1 1,039,462 + ECD_00976 0.62 -1.1 1,040,189 - +0.5 1,040,309 - ECD_00977 0.22 -1.5 1,040,309 - ECD_00977 0.22 +1.1 1,040,317 + ECD_00977 0.23 -1.0 1,040,318 - ECD_00977 0.23 -1.7 1,040,318 - ECD_00977 0.23 -0.7 1,040,319 + ECD_00977 0.23 -0.9 1,040,488 + ECD_00977 0.47 +0.4 1,040,522 + ECD_00977 0.52 +0.3 1,040,752 + ECD_00977 0.84 -1.1 1,040,844 + +1.0 1,040,971 - ECD_00978 0.19 -0.9 1,040,993 + ECD_00978 0.23 +2.7 1,040,993 + ECD_00978 0.23 +0.5 1,041,093 + ECD_00978 0.40 -0.7
Or see this region's nucleotide sequence