Strain Fitness in Escherichia coli BL21 around ECD_00941

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00939 and ECD_00940 overlap by 4 nucleotidesECD_00940 and ECD_00941 overlap by 8 nucleotidesECD_00941 and ECD_00942 are separated by 355 nucleotidesECD_00942 and ECD_00943 are separated by 82 nucleotides ECD_00939: ECD_00939 - alkanesulfonate monooxygenase, FMNH(2)-dependent, at 999,932 to 1,001,077 _00939 ECD_00940: ECD_00940 - aliphatic sulfonate ABC transporter periplasmic binding protein, at 1,001,074 to 1,002,033 _00940 ECD_00941: ECD_00941 - NAD(P)H-dependent FMN reductase, at 1,002,026 to 1,002,601 _00941 ECD_00942: ECD_00942 - laminin-binding fimbrin subunit, at 1,002,957 to 1,003,496 _00942 ECD_00943: ECD_00943 - putative periplasmic pilin chaperone, at 1,003,579 to 1,004,280 _00943 Position (kb) 1002 1003Strain fitness (log2 ratio) -1 0 1at 1001.078 kb on - strandat 1001.461 kb on + strand, within ECD_00940at 1001.550 kb on - strand, within ECD_00940at 1001.942 kb on - strandat 1001.943 kb on + strandat 1001.986 kb on - strandat 1002.028 kb on - strandat 1002.028 kb on - strandat 1002.373 kb on - strand, within ECD_00941at 1002.507 kb on - strand, within ECD_00941at 1002.538 kb on - strand, within ECD_00941at 1002.602 kb on - strandat 1002.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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1,001,078 - -0.1
1,001,461 + ECD_00940 0.40 -0.4
1,001,550 - ECD_00940 0.50 +0.6
1,001,942 - -0.8
1,001,943 + +0.8
1,001,986 - +0.4
1,002,028 - -0.1
1,002,028 - -0.7
1,002,373 - ECD_00941 0.60 +0.7
1,002,507 - ECD_00941 0.84 +0.5
1,002,538 - ECD_00941 0.89 +1.2
1,002,602 - -0.0
1,002,602 - -1.2

Or see this region's nucleotide sequence