Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00939 and ECD_00940 overlap by 4 nucleotides ECD_00940 and ECD_00941 overlap by 8 nucleotides ECD_00941 and ECD_00942 are separated by 355 nucleotides ECD_00942 and ECD_00943 are separated by 82 nucleotides
ECD_00939: ECD_00939 - alkanesulfonate monooxygenase, FMNH(2)-dependent, at 999,932 to 1,001,077
_00939
ECD_00940: ECD_00940 - aliphatic sulfonate ABC transporter periplasmic binding protein, at 1,001,074 to 1,002,033
_00940
ECD_00941: ECD_00941 - NAD(P)H-dependent FMN reductase, at 1,002,026 to 1,002,601
_00941
ECD_00942: ECD_00942 - laminin-binding fimbrin subunit, at 1,002,957 to 1,003,496
_00942
ECD_00943: ECD_00943 - putative periplasmic pilin chaperone, at 1,003,579 to 1,004,280
_00943
Position (kb)
1002
1003 Strain fitness (log2 ratio)
-1
0
1 at 1001.078 kb on - strand at 1001.461 kb on + strand, within ECD_00940 at 1001.550 kb on - strand, within ECD_00940 at 1001.942 kb on - strand at 1001.943 kb on + strand at 1001.986 kb on - strand at 1002.028 kb on - strand at 1002.028 kb on - strand at 1002.373 kb on - strand, within ECD_00941 at 1002.507 kb on - strand, within ECD_00941 at 1002.538 kb on - strand, within ECD_00941 at 1002.602 kb on - strand at 1002.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 1,001,078 - -0.1 1,001,461 + ECD_00940 0.40 -0.4 1,001,550 - ECD_00940 0.50 +0.6 1,001,942 - -0.8 1,001,943 + +0.8 1,001,986 - +0.4 1,002,028 - -0.1 1,002,028 - -0.7 1,002,373 - ECD_00941 0.60 +0.7 1,002,507 - ECD_00941 0.84 +0.5 1,002,538 - ECD_00941 0.89 +1.2 1,002,602 - -0.0 1,002,602 - -1.2
Or see this region's nucleotide sequence