Strain Fitness in Escherichia coli BL21 around ECD_00337

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00335 and ECD_00336 are separated by 49 nucleotidesECD_00336 and ECD_00337 are separated by 257 nucleotidesECD_00337 and ECD_00338 are separated by 71 nucleotidesECD_00338 and ECD_00339 are separated by 207 nucleotides ECD_00335: ECD_00335 - shikimate kinase II, at 371,030 to 371,554 _00335 ECD_00336: ECD_00336 - OxyR-regulated conserved protein, at 371,604 to 371,795 _00336 ECD_00337: ECD_00337 - AroM family protein, at 372,053 to 372,730 _00337 ECD_00338: ECD_00338 - UPF0345 family protein, at 372,802 to 373,086 _00338 ECD_00339: ECD_00339 - hypothetical protein, at 373,294 to 373,575 _00339 Position (kb) 372 373Strain fitness (log2 ratio) -2 -1 0 1 2at 371.155 kb on + strand, within ECD_00335at 371.257 kb on + strand, within ECD_00335at 371.454 kb on + strand, within ECD_00335at 371.473 kb on + strand, within ECD_00335at 371.474 kb on - strand, within ECD_00335at 371.569 kb on + strandat 371.570 kb on - strandat 371.592 kb on + strandat 371.592 kb on + strandat 371.593 kb on - strandat 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.638 kb on - strand, within ECD_00336at 371.639 kb on + strand, within ECD_00336at 371.639 kb on + strand, within ECD_00336at 371.639 kb on + strand, within ECD_00336at 371.640 kb on - strand, within ECD_00336at 371.641 kb on + strand, within ECD_00336at 371.641 kb on + strand, within ECD_00336at 371.642 kb on - strand, within ECD_00336at 371.642 kb on - strand, within ECD_00336at 371.642 kb on - strand, within ECD_00336at 371.708 kb on + strand, within ECD_00336at 371.878 kb on + strandat 371.974 kb on + strandat 371.974 kb on + strandat 371.983 kb on + strandat 371.983 kb on + strandat 371.984 kb on - strandat 371.984 kb on - strandat 372.090 kb on + strandat 372.090 kb on + strandat 372.090 kb on + strandat 372.095 kb on - strandat 372.095 kb on - strandat 372.142 kb on + strand, within ECD_00337at 372.142 kb on + strand, within ECD_00337at 372.172 kb on - strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.238 kb on - strand, within ECD_00337at 372.238 kb on - strand, within ECD_00337at 372.334 kb on + strand, within ECD_00337at 372.335 kb on - strand, within ECD_00337at 372.337 kb on - strand, within ECD_00337at 372.339 kb on + strand, within ECD_00337at 372.365 kb on - strand, within ECD_00337at 372.427 kb on + strand, within ECD_00337at 372.693 kb on + strandat 372.761 kb on + strandat 372.771 kb on + strandat 372.888 kb on + strand, within ECD_00338at 372.994 kb on + strand, within ECD_00338at 372.994 kb on + strand, within ECD_00338at 372.995 kb on - strand, within ECD_00338at 373.212 kb on + strandat 373.213 kb on - strandat 373.348 kb on - strand, within ECD_00339at 373.405 kb on - strand, within ECD_00339at 373.463 kb on + strand, within ECD_00339at 373.463 kb on + strand, within ECD_00339at 373.469 kb on + strand, within ECD_00339at 373.499 kb on + strand, within ECD_00339at 373.616 kb on + strandat 373.616 kb on + strandat 373.616 kb on + strandat 373.617 kb on - strandat 373.617 kb on - strandat 373.654 kb on - strandat 373.659 kb on + strandat 373.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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371,155 + ECD_00335 0.24 -0.1
371,257 + ECD_00335 0.43 -0.2
371,454 + ECD_00335 0.81 -2.1
371,473 + ECD_00335 0.84 -1.2
371,474 - ECD_00335 0.85 +0.8
371,569 + +0.7
371,570 - +0.4
371,592 + +0.7
371,592 + +0.1
371,593 - +0.1
371,637 + ECD_00336 0.17 +0.4
371,637 + ECD_00336 0.17 +0.4
371,637 + ECD_00336 0.17 -0.7
371,637 + ECD_00336 0.17 -0.6
371,637 + ECD_00336 0.17 -0.4
371,637 + ECD_00336 0.17 +0.3
371,637 + ECD_00336 0.17 +0.5
371,638 - ECD_00336 0.18 -1.8
371,639 + ECD_00336 0.18 +0.0
371,639 + ECD_00336 0.18 +0.2
371,639 + ECD_00336 0.18 -0.9
371,640 - ECD_00336 0.19 +1.0
371,641 + ECD_00336 0.19 -0.2
371,641 + ECD_00336 0.19 +1.0
371,642 - ECD_00336 0.20 -0.3
371,642 - ECD_00336 0.20 +0.5
371,642 - ECD_00336 0.20 -0.6
371,708 + ECD_00336 0.54 +1.0
371,878 + +0.6
371,974 + +0.7
371,974 + -0.5
371,983 + +0.0
371,983 + -0.0
371,984 - -0.4
371,984 - +0.2
372,090 + +0.8
372,090 + +0.2
372,090 + +0.1
372,095 - +1.8
372,095 - +0.7
372,142 + ECD_00337 0.13 -0.2
372,142 + ECD_00337 0.13 -0.5
372,172 - ECD_00337 0.18 -1.2
372,237 + ECD_00337 0.27 +0.5
372,237 + ECD_00337 0.27 -1.1
372,237 + ECD_00337 0.27 -0.8
372,238 - ECD_00337 0.27 -0.9
372,238 - ECD_00337 0.27 -0.3
372,334 + ECD_00337 0.41 -1.6
372,335 - ECD_00337 0.42 +0.0
372,337 - ECD_00337 0.42 +1.4
372,339 + ECD_00337 0.42 -0.3
372,365 - ECD_00337 0.46 -1.0
372,427 + ECD_00337 0.55 -0.0
372,693 + +0.3
372,761 + +1.3
372,771 + -0.0
372,888 + ECD_00338 0.30 +0.3
372,994 + ECD_00338 0.67 +0.4
372,994 + ECD_00338 0.67 +0.7
372,995 - ECD_00338 0.68 +0.4
373,212 + -0.2
373,213 - -0.2
373,348 - ECD_00339 0.19 +0.2
373,405 - ECD_00339 0.39 -0.2
373,463 + ECD_00339 0.60 +0.2
373,463 + ECD_00339 0.60 -0.2
373,469 + ECD_00339 0.62 -1.1
373,499 + ECD_00339 0.73 -1.3
373,616 + +0.4
373,616 + -0.3
373,616 + +0.4
373,617 - -1.3
373,617 - -0.1
373,654 - -0.6
373,659 + +2.2
373,660 - +0.0

Or see this region's nucleotide sequence