Strain Fitness in Escherichia coli BL21 around ECD_t00008

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00630 and ECD_t00008 are separated by 153 nucleotidesECD_t00008 and ECD_t00009 are separated by 37 nucleotidesECD_t00009 and ECD_t00010 are separated by 47 nucleotidesECD_t00010 and ECD_t00011 are separated by 15 nucleotidesECD_t00011 and ECD_t00012 are separated by 34 nucleotidesECD_t00012 and ECD_t00013 are separated by 23 nucleotidesECD_t00013 and ECD_t00014 are separated by 8 nucleotides ECD_00630: ECD_00630 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase, at 654,975 to 656,150 _00630 ECD_t00008: ECD_t00008 - tRNA-Gln, at 656,304 to 656,378 _t00008 ECD_t00009: ECD_t00009 - tRNA-Gln, at 656,416 to 656,490 _t00009 ECD_t00010: ECD_t00010 - tRNA-Met, at 656,538 to 656,614 _t00010 ECD_t00011: ECD_t00011 - tRNA-Gln, at 656,630 to 656,704 _t00011 ECD_t00012: ECD_t00012 - tRNA-Gln, at 656,739 to 656,813 _t00012 ECD_t00013: ECD_t00013 - tRNA-Leu, at 656,837 to 656,921 _t00013 ECD_t00014: ECD_t00014 - tRNA-Met, at 656,930 to 657,006 _t00014 Position (kb) 656 657Strain fitness (log2 ratio) -1 0 1at 656.133 kb on + strandat 656.148 kb on + strandat 656.154 kb on + strandat 656.154 kb on + strandat 656.314 kb on - strand, within ECD_t00008at 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.392 kb on - strandat 656.399 kb on - strandat 656.399 kb on - strandat 656.578 kb on - strand, within ECD_t00010at 656.640 kb on - strand, within ECD_t00011at 657.142 kb on - strandat 657.153 kb on - strandat 657.160 kb on - strandat 657.160 kb on - strandat 657.182 kb on + strandat 657.182 kb on + strandat 657.182 kb on + strandat 657.183 kb on - strandat 657.201 kb on + strandat 657.228 kb on + strandat 657.228 kb on + strandat 657.247 kb on + strandat 657.262 kb on + strandat 657.262 kb on + strandat 657.262 kb on + strandat 657.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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656,133 + +0.5
656,148 + -0.5
656,154 + -0.4
656,154 + -1.3
656,314 - ECD_t00008 0.13 -0.5
656,392 - -0.5
656,392 - -0.9
656,392 - -0.5
656,392 - -0.0
656,392 - -0.3
656,392 - +0.6
656,399 - +0.0
656,399 - -0.1
656,578 - ECD_t00010 0.52 +0.2
656,640 - ECD_t00011 0.13 +0.6
657,142 - +1.2
657,153 - -0.4
657,160 - +0.1
657,160 - -0.2
657,182 + -0.7
657,182 + -0.7
657,182 + +0.2
657,183 - -0.2
657,201 + +0.7
657,228 + -0.6
657,228 + +0.0
657,247 + -0.0
657,262 + +0.7
657,262 + +0.4
657,262 + +0.3
657,344 - -0.3

Or see this region's nucleotide sequence