Strain Fitness in Escherichia coli BL21 around ECD_04236

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04235 and ECD_04236 are separated by 137 nucleotidesECD_04236 and ECD_04237 are separated by 253 nucleotidesECD_04237 and ECD_04238 are separated by 48 nucleotides ECD_04235: ECD_04235 - L-galactonate oxidoreductase; L-gulonate oxidoreductase, at 4,514,365 to 4,515,387 _04235 ECD_04236: ECD_04236 - OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane-bound) and II (soluble), at 4,515,525 to 4,517,816 _04236 ECD_04237: ECD_04237 - putative DUF2501 family periplasmic protein, at 4,518,070 to 4,518,564 _04237 ECD_04238: ECD_04238 - DNA biosynthesis protein, at 4,518,613 to 4,519,350 _04238 Position (kb) 4515 4516 4517 4518Strain fitness (log2 ratio) -2 -1 0 1 2at 4514.629 kb on + strand, within ECD_04235at 4514.671 kb on - strand, within ECD_04235at 4514.731 kb on + strand, within ECD_04235at 4514.987 kb on + strand, within ECD_04235at 4515.367 kb on - strandat 4515.402 kb on + strandat 4515.403 kb on - strandat 4515.509 kb on - strandat 4515.527 kb on - strandat 4515.541 kb on - strandat 4515.727 kb on - strandat 4515.763 kb on + strand, within ECD_04236at 4515.959 kb on + strand, within ECD_04236at 4516.016 kb on + strand, within ECD_04236at 4516.016 kb on + strand, within ECD_04236at 4516.022 kb on + strand, within ECD_04236at 4516.226 kb on - strand, within ECD_04236at 4516.452 kb on - strand, within ECD_04236at 4516.468 kb on + strand, within ECD_04236at 4516.469 kb on - strand, within ECD_04236at 4516.469 kb on - strand, within ECD_04236at 4516.469 kb on - strand, within ECD_04236at 4516.596 kb on - strand, within ECD_04236at 4516.629 kb on + strand, within ECD_04236at 4516.785 kb on - strand, within ECD_04236at 4516.794 kb on - strand, within ECD_04236at 4516.928 kb on - strand, within ECD_04236at 4516.972 kb on - strand, within ECD_04236at 4516.972 kb on - strand, within ECD_04236at 4516.972 kb on - strand, within ECD_04236at 4517.045 kb on - strand, within ECD_04236at 4517.045 kb on - strand, within ECD_04236at 4517.291 kb on - strand, within ECD_04236at 4517.318 kb on + strand, within ECD_04236at 4517.318 kb on + strand, within ECD_04236at 4517.319 kb on - strand, within ECD_04236at 4517.319 kb on - strand, within ECD_04236at 4517.320 kb on + strand, within ECD_04236at 4517.320 kb on + strand, within ECD_04236at 4517.320 kb on + strand, within ECD_04236at 4517.321 kb on - strand, within ECD_04236at 4517.321 kb on - strand, within ECD_04236at 4517.366 kb on + strand, within ECD_04236at 4517.366 kb on + strand, within ECD_04236at 4517.367 kb on - strand, within ECD_04236at 4517.367 kb on - strand, within ECD_04236at 4517.590 kb on + strandat 4517.591 kb on - strandat 4517.591 kb on - strandat 4517.630 kb on + strandat 4517.632 kb on + strandat 4517.632 kb on + strandat 4517.632 kb on + strandat 4517.633 kb on - strandat 4517.669 kb on - strandat 4517.691 kb on - strandat 4517.691 kb on - strandat 4517.695 kb on - strandat 4517.695 kb on - strandat 4517.747 kb on + strandat 4517.747 kb on + strandat 4517.747 kb on + strandat 4517.747 kb on + strandat 4517.748 kb on - strandat 4517.768 kb on - strandat 4517.768 kb on - strandat 4517.806 kb on - strandat 4517.806 kb on - strandat 4517.832 kb on - strandat 4517.879 kb on + strandat 4517.880 kb on - strandat 4518.049 kb on + strandat 4518.215 kb on + strand, within ECD_04237at 4518.323 kb on + strand, within ECD_04237at 4518.354 kb on + strand, within ECD_04237at 4518.355 kb on - strand, within ECD_04237at 4518.355 kb on - strand, within ECD_04237at 4518.355 kb on - strand, within ECD_04237at 4518.364 kb on + strand, within ECD_04237at 4518.364 kb on + strand, within ECD_04237at 4518.394 kb on - strand, within ECD_04237at 4518.394 kb on - strand, within ECD_04237at 4518.394 kb on - strand, within ECD_04237at 4518.397 kb on + strand, within ECD_04237at 4518.398 kb on - strand, within ECD_04237at 4518.398 kb on - strand, within ECD_04237at 4518.512 kb on - strand, within ECD_04237at 4518.549 kb on + strandat 4518.593 kb on + strandat 4518.594 kb on - strandat 4518.614 kb on + strandat 4518.614 kb on + strandat 4518.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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4,514,629 + ECD_04235 0.26 -0.4
4,514,671 - ECD_04235 0.30 -0.2
4,514,731 + ECD_04235 0.36 +1.5
4,514,987 + ECD_04235 0.61 +0.2
4,515,367 - +2.2
4,515,402 + -0.1
4,515,403 - +1.3
4,515,509 - +0.4
4,515,527 - +1.4
4,515,541 - +1.0
4,515,727 - +1.5
4,515,763 + ECD_04236 0.10 -0.8
4,515,959 + ECD_04236 0.19 +1.3
4,516,016 + ECD_04236 0.21 +1.7
4,516,016 + ECD_04236 0.21 +0.3
4,516,022 + ECD_04236 0.22 +0.8
4,516,226 - ECD_04236 0.31 +1.4
4,516,452 - ECD_04236 0.40 +0.0
4,516,468 + ECD_04236 0.41 +0.7
4,516,469 - ECD_04236 0.41 +0.8
4,516,469 - ECD_04236 0.41 +0.9
4,516,469 - ECD_04236 0.41 +1.5
4,516,596 - ECD_04236 0.47 -0.4
4,516,629 + ECD_04236 0.48 +0.8
4,516,785 - ECD_04236 0.55 +1.8
4,516,794 - ECD_04236 0.55 -0.0
4,516,928 - ECD_04236 0.61 +0.4
4,516,972 - ECD_04236 0.63 +0.8
4,516,972 - ECD_04236 0.63 +0.1
4,516,972 - ECD_04236 0.63 +0.1
4,517,045 - ECD_04236 0.66 +0.3
4,517,045 - ECD_04236 0.66 +0.9
4,517,291 - ECD_04236 0.77 +1.1
4,517,318 + ECD_04236 0.78 +0.8
4,517,318 + ECD_04236 0.78 +1.0
4,517,319 - ECD_04236 0.78 +0.4
4,517,319 - ECD_04236 0.78 +0.6
4,517,320 + ECD_04236 0.78 -0.4
4,517,320 + ECD_04236 0.78 +1.0
4,517,320 + ECD_04236 0.78 +0.2
4,517,321 - ECD_04236 0.78 +0.7
4,517,321 - ECD_04236 0.78 +0.2
4,517,366 + ECD_04236 0.80 +0.9
4,517,366 + ECD_04236 0.80 -0.6
4,517,367 - ECD_04236 0.80 +0.6
4,517,367 - ECD_04236 0.80 +0.6
4,517,590 + +0.9
4,517,591 - +0.6
4,517,591 - +0.8
4,517,630 + +1.0
4,517,632 + -0.3
4,517,632 + +1.4
4,517,632 + +0.8
4,517,633 - +1.6
4,517,669 - +1.1
4,517,691 - +0.2
4,517,691 - +1.2
4,517,695 - +2.0
4,517,695 - +1.4
4,517,747 + +1.0
4,517,747 + +1.6
4,517,747 + +0.8
4,517,747 + +0.8
4,517,748 - +0.1
4,517,768 - +0.1
4,517,768 - -0.1
4,517,806 - +2.3
4,517,806 - +0.3
4,517,832 - -0.0
4,517,879 + +0.9
4,517,880 - +0.3
4,518,049 + +0.6
4,518,215 + ECD_04237 0.29 -1.3
4,518,323 + ECD_04237 0.51 -0.5
4,518,354 + ECD_04237 0.57 -0.0
4,518,355 - ECD_04237 0.58 +0.7
4,518,355 - ECD_04237 0.58 -0.4
4,518,355 - ECD_04237 0.58 +2.3
4,518,364 + ECD_04237 0.59 +1.7
4,518,364 + ECD_04237 0.59 -0.1
4,518,394 - ECD_04237 0.65 +0.8
4,518,394 - ECD_04237 0.65 -0.3
4,518,394 - ECD_04237 0.65 +2.6
4,518,397 + ECD_04237 0.66 +2.4
4,518,398 - ECD_04237 0.66 +0.1
4,518,398 - ECD_04237 0.66 +0.1
4,518,512 - ECD_04237 0.89 +0.8
4,518,549 + -2.0
4,518,593 + -0.0
4,518,594 - +0.6
4,518,614 + +0.8
4,518,614 + -0.5
4,518,615 - -0.0

Or see this region's nucleotide sequence