Strain Fitness in Escherichia coli BL21 around ECD_04192

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04191 and ECD_04192 are separated by 80 nucleotidesECD_04192 and ECD_04193 are separated by 214 nucleotides ECD_04191: ECD_04191 - mannonate hydrolase, at 4,460,915 to 4,462,099 _04191 ECD_04192: ECD_04192 - D-mannonate oxidoreductase, NAD-dependent, at 4,462,180 to 4,463,640 _04192 ECD_04193: ECD_04193 - fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor, at 4,463,855 to 4,464,628 _04193 Position (kb) 4462 4463 4464Strain fitness (log2 ratio) -2 -1 0 1 2at 4461.219 kb on - strand, within ECD_04191at 4461.264 kb on - strand, within ECD_04191at 4461.406 kb on + strand, within ECD_04191at 4461.407 kb on - strand, within ECD_04191at 4461.440 kb on - strand, within ECD_04191at 4461.476 kb on + strand, within ECD_04191at 4461.477 kb on - strand, within ECD_04191at 4461.512 kb on + strand, within ECD_04191at 4461.513 kb on - strand, within ECD_04191at 4461.521 kb on - strand, within ECD_04191at 4461.601 kb on + strand, within ECD_04191at 4461.673 kb on + strand, within ECD_04191at 4461.674 kb on - strand, within ECD_04191at 4461.719 kb on - strand, within ECD_04191at 4461.770 kb on - strand, within ECD_04191at 4461.770 kb on - strand, within ECD_04191at 4461.794 kb on - strand, within ECD_04191at 4461.797 kb on + strand, within ECD_04191at 4461.880 kb on + strand, within ECD_04191at 4461.881 kb on - strand, within ECD_04191at 4461.881 kb on - strand, within ECD_04191at 4461.881 kb on - strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.884 kb on + strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4461.885 kb on - strand, within ECD_04191at 4462.016 kb on + strandat 4462.016 kb on + strandat 4462.098 kb on - strandat 4462.177 kb on - strandat 4462.185 kb on + strandat 4462.188 kb on + strandat 4462.188 kb on + strandat 4462.188 kb on + strandat 4462.300 kb on + strandat 4462.300 kb on + strandat 4462.301 kb on - strandat 4462.301 kb on - strandat 4462.301 kb on - strandat 4462.353 kb on + strand, within ECD_04192at 4462.414 kb on + strand, within ECD_04192at 4462.509 kb on + strand, within ECD_04192at 4462.509 kb on + strand, within ECD_04192at 4462.510 kb on - strand, within ECD_04192at 4462.670 kb on - strand, within ECD_04192at 4462.720 kb on - strand, within ECD_04192at 4462.971 kb on + strand, within ECD_04192at 4462.972 kb on - strand, within ECD_04192at 4463.058 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.277 kb on + strand, within ECD_04192at 4463.405 kb on - strand, within ECD_04192at 4463.489 kb on - strand, within ECD_04192at 4463.590 kb on + strandat 4463.590 kb on + strandat 4463.591 kb on - strandat 4463.638 kb on + strandat 4463.683 kb on - strandat 4463.719 kb on + strandat 4463.748 kb on - strandat 4463.748 kb on - strandat 4463.748 kb on - strandat 4464.068 kb on + strand, within ECD_04193at 4464.068 kb on + strand, within ECD_04193at 4464.069 kb on - strand, within ECD_04193

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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4,461,219 - ECD_04191 0.26 +0.2
4,461,264 - ECD_04191 0.29 +0.2
4,461,406 + ECD_04191 0.41 -0.5
4,461,407 - ECD_04191 0.42 -0.6
4,461,440 - ECD_04191 0.44 +0.5
4,461,476 + ECD_04191 0.47 -0.6
4,461,477 - ECD_04191 0.47 +0.7
4,461,512 + ECD_04191 0.50 +0.2
4,461,513 - ECD_04191 0.50 -0.0
4,461,521 - ECD_04191 0.51 +0.2
4,461,601 + ECD_04191 0.58 -1.6
4,461,673 + ECD_04191 0.64 +1.0
4,461,674 - ECD_04191 0.64 +1.0
4,461,719 - ECD_04191 0.68 +0.2
4,461,770 - ECD_04191 0.72 +1.0
4,461,770 - ECD_04191 0.72 +0.3
4,461,794 - ECD_04191 0.74 +0.2
4,461,797 + ECD_04191 0.74 -0.5
4,461,880 + ECD_04191 0.81 -0.0
4,461,881 - ECD_04191 0.82 -0.0
4,461,881 - ECD_04191 0.82 -0.0
4,461,881 - ECD_04191 0.82 -0.7
4,461,884 + ECD_04191 0.82 +0.3
4,461,884 + ECD_04191 0.82 -2.0
4,461,884 + ECD_04191 0.82 +0.8
4,461,884 + ECD_04191 0.82 -0.0
4,461,885 - ECD_04191 0.82 -0.2
4,461,885 - ECD_04191 0.82 +1.3
4,461,885 - ECD_04191 0.82 +0.1
4,461,885 - ECD_04191 0.82 +0.8
4,461,885 - ECD_04191 0.82 -0.3
4,462,016 + -0.0
4,462,016 + +1.4
4,462,098 - +1.0
4,462,177 - +0.8
4,462,185 + -0.7
4,462,188 + -1.2
4,462,188 + +2.4
4,462,188 + -0.3
4,462,300 + +0.1
4,462,300 + +0.8
4,462,301 - -0.0
4,462,301 - -1.0
4,462,301 - +1.0
4,462,353 + ECD_04192 0.12 +1.0
4,462,414 + ECD_04192 0.16 -0.6
4,462,509 + ECD_04192 0.23 +0.5
4,462,509 + ECD_04192 0.23 +0.6
4,462,510 - ECD_04192 0.23 -0.7
4,462,670 - ECD_04192 0.34 +0.5
4,462,720 - ECD_04192 0.37 -0.0
4,462,971 + ECD_04192 0.54 +0.1
4,462,972 - ECD_04192 0.54 -0.0
4,463,058 + ECD_04192 0.60 -0.3
4,463,277 + ECD_04192 0.75 -0.9
4,463,277 + ECD_04192 0.75 +0.1
4,463,277 + ECD_04192 0.75 +0.0
4,463,277 + ECD_04192 0.75 +0.3
4,463,405 - ECD_04192 0.84 -0.8
4,463,489 - ECD_04192 0.90 +0.3
4,463,590 + +0.7
4,463,590 + +0.5
4,463,591 - +0.2
4,463,638 + +1.6
4,463,683 - +1.2
4,463,719 + +0.8
4,463,748 - -1.0
4,463,748 - -0.4
4,463,748 - -0.4
4,464,068 + ECD_04193 0.28 +1.8
4,464,068 + ECD_04193 0.28 +0.5
4,464,069 - ECD_04193 0.28 +1.0

Or see this region's nucleotide sequence