Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00015 and ECD_r00016 are separated by 186 nucleotides ECD_r00016 and ECD_03742 are separated by 101 nucleotides ECD_03742 and ECD_03743 overlap by 19 nucleotides ECD_03743 and ECD_03744 are separated by 69 nucleotides ECD_03744 and ECD_03745 are separated by 76 nucleotides
ECD_r00015: ECD_r00015 - 23S ribosomal RNA, at 3,944,332 to 3,947,235
_r00015
ECD_r00016: ECD_r00016 - 5S ribosomal RNA, at 3,947,422 to 3,947,541
_r00016
ECD_03742: ECD_03742 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 3,947,643 to 3,948,170
_03742
ECD_03743: ECD_03743 - molybdopterin-guanine dinucleotide synthase, at 3,948,152 to 3,948,736
_03743
ECD_03744: ECD_03744 - DUF1040 protein YihD, at 3,948,806 to 3,949,075
_03744
ECD_03745: ECD_03745 - Cpx stress response Thr/Ser protein kinase; MazF antagonist protein, at 3,949,152 to 3,950,138
_03745
Position (kb)
3947
3948
3949 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3947.634 kb on + strand at 3947.634 kb on + strand at 3947.702 kb on + strand, within ECD_03742 at 3947.702 kb on + strand, within ECD_03742 at 3947.703 kb on - strand, within ECD_03742 at 3947.703 kb on - strand, within ECD_03742 at 3947.757 kb on - strand, within ECD_03742 at 3947.757 kb on - strand, within ECD_03742 at 3947.901 kb on + strand, within ECD_03742 at 3947.998 kb on + strand, within ECD_03742 at 3947.998 kb on + strand, within ECD_03742 at 3947.998 kb on + strand, within ECD_03742 at 3947.999 kb on - strand, within ECD_03742 at 3947.999 kb on - strand, within ECD_03742 at 3947.999 kb on - strand, within ECD_03742 at 3948.003 kb on - strand, within ECD_03742 at 3948.003 kb on - strand, within ECD_03742 at 3948.041 kb on + strand, within ECD_03742 at 3948.042 kb on - strand, within ECD_03742 at 3948.048 kb on - strand, within ECD_03742 at 3948.048 kb on - strand, within ECD_03742 at 3948.107 kb on + strand, within ECD_03742 at 3948.191 kb on - strand at 3948.214 kb on + strand, within ECD_03743 at 3948.260 kb on + strand, within ECD_03743 at 3948.260 kb on + strand, within ECD_03743 at 3948.261 kb on - strand, within ECD_03743 at 3948.291 kb on + strand, within ECD_03743 at 3948.334 kb on + strand, within ECD_03743 at 3948.411 kb on - strand, within ECD_03743 at 3948.556 kb on - strand, within ECD_03743 at 3948.607 kb on + strand, within ECD_03743 at 3948.607 kb on + strand, within ECD_03743 at 3948.607 kb on + strand, within ECD_03743 at 3948.608 kb on - strand, within ECD_03743 at 3948.669 kb on - strand, within ECD_03743 at 3948.717 kb on - strand at 3948.773 kb on - strand at 3948.793 kb on - strand at 3948.793 kb on - strand at 3948.805 kb on + strand at 3948.815 kb on - strand at 3949.066 kb on + strand at 3949.067 kb on - strand at 3949.083 kb on + strand at 3949.157 kb on + strand at 3949.157 kb on + strand at 3949.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,947,634 + -1.2 3,947,634 + -2.2 3,947,702 + ECD_03742 0.11 -1.1 3,947,702 + ECD_03742 0.11 -0.2 3,947,703 - ECD_03742 0.11 +0.3 3,947,703 - ECD_03742 0.11 -1.6 3,947,757 - ECD_03742 0.22 +1.8 3,947,757 - ECD_03742 0.22 +1.4 3,947,901 + ECD_03742 0.49 +1.6 3,947,998 + ECD_03742 0.67 -0.2 3,947,998 + ECD_03742 0.67 +0.5 3,947,998 + ECD_03742 0.67 +0.2 3,947,999 - ECD_03742 0.67 +0.5 3,947,999 - ECD_03742 0.67 +0.3 3,947,999 - ECD_03742 0.67 +0.3 3,948,003 - ECD_03742 0.68 +0.4 3,948,003 - ECD_03742 0.68 -0.4 3,948,041 + ECD_03742 0.75 +1.6 3,948,042 - ECD_03742 0.76 +0.2 3,948,048 - ECD_03742 0.77 -0.9 3,948,048 - ECD_03742 0.77 +0.5 3,948,107 + ECD_03742 0.88 +1.2 3,948,191 - -0.6 3,948,214 + ECD_03743 0.11 +0.2 3,948,260 + ECD_03743 0.18 +0.7 3,948,260 + ECD_03743 0.18 +0.3 3,948,261 - ECD_03743 0.19 -1.5 3,948,291 + ECD_03743 0.24 -0.3 3,948,334 + ECD_03743 0.31 -1.0 3,948,411 - ECD_03743 0.44 +0.2 3,948,556 - ECD_03743 0.69 -1.1 3,948,607 + ECD_03743 0.78 +1.5 3,948,607 + ECD_03743 0.78 +0.8 3,948,607 + ECD_03743 0.78 -0.6 3,948,608 - ECD_03743 0.78 +0.7 3,948,669 - ECD_03743 0.88 +0.4 3,948,717 - +0.4 3,948,773 - +0.4 3,948,793 - +0.7 3,948,793 - -1.1 3,948,805 + +0.6 3,948,815 - +0.6 3,949,066 + +0.8 3,949,067 - -0.2 3,949,083 + -0.2 3,949,157 + -0.9 3,949,157 + -0.3 3,949,157 + +0.1
Or see this region's nucleotide sequence