Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03563 and ECD_03564 are separated by 166 nucleotides ECD_03564 and ECD_03565 overlap by 4 nucleotides
ECD_03563: ECD_03563 - putative transporter, at 3,746,768 to 3,748,483
_03563
ECD_03564: ECD_03564 - AraC family putative transcriptional regulator, at 3,748,650 to 3,749,543
_03564
ECD_03565: ECD_03565 - putative 6-phospho-beta-glucosidase, at 3,749,540 to 3,750,862
_03565
Position (kb)
3748
3749
3750 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3747.704 kb on - strand, within ECD_03563 at 3747.711 kb on + strand, within ECD_03563 at 3747.711 kb on + strand, within ECD_03563 at 3747.712 kb on - strand, within ECD_03563 at 3747.833 kb on - strand, within ECD_03563 at 3747.984 kb on - strand, within ECD_03563 at 3748.106 kb on + strand, within ECD_03563 at 3748.107 kb on - strand, within ECD_03563 at 3748.126 kb on + strand, within ECD_03563 at 3748.127 kb on - strand, within ECD_03563 at 3748.127 kb on - strand, within ECD_03563 at 3748.127 kb on - strand, within ECD_03563 at 3748.129 kb on + strand, within ECD_03563 at 3748.130 kb on - strand, within ECD_03563 at 3748.211 kb on + strand, within ECD_03563 at 3748.279 kb on - strand, within ECD_03563 at 3748.332 kb on - strand at 3748.380 kb on + strand at 3748.489 kb on - strand at 3748.499 kb on + strand at 3748.500 kb on - strand at 3748.527 kb on - strand at 3748.537 kb on - strand at 3748.701 kb on - strand at 3748.764 kb on - strand, within ECD_03564 at 3748.767 kb on + strand, within ECD_03564 at 3748.767 kb on + strand, within ECD_03564 at 3748.767 kb on + strand, within ECD_03564 at 3748.767 kb on + strand, within ECD_03564 at 3748.767 kb on + strand, within ECD_03564 at 3748.845 kb on + strand, within ECD_03564 at 3748.846 kb on - strand, within ECD_03564 at 3748.847 kb on + strand, within ECD_03564 at 3748.847 kb on + strand, within ECD_03564 at 3748.847 kb on + strand, within ECD_03564 at 3748.853 kb on - strand, within ECD_03564 at 3748.913 kb on + strand, within ECD_03564 at 3748.947 kb on + strand, within ECD_03564 at 3749.040 kb on + strand, within ECD_03564 at 3749.042 kb on + strand, within ECD_03564 at 3749.169 kb on + strand, within ECD_03564 at 3749.169 kb on + strand, within ECD_03564 at 3749.227 kb on + strand, within ECD_03564 at 3749.264 kb on + strand, within ECD_03564 at 3749.285 kb on + strand, within ECD_03564 at 3749.343 kb on + strand, within ECD_03564 at 3749.344 kb on - strand, within ECD_03564 at 3749.346 kb on + strand, within ECD_03564 at 3749.347 kb on - strand, within ECD_03564 at 3749.380 kb on + strand, within ECD_03564 at 3749.383 kb on + strand, within ECD_03564 at 3749.384 kb on - strand, within ECD_03564 at 3749.384 kb on - strand, within ECD_03564 at 3749.468 kb on + strand at 3749.497 kb on + strand at 3749.541 kb on + strand at 3749.546 kb on + strand at 3749.593 kb on + strand at 3749.593 kb on + strand at 3749.593 kb on + strand at 3749.594 kb on - strand at 3749.594 kb on - strand at 3749.635 kb on + strand at 3749.635 kb on + strand at 3749.635 kb on + strand at 3749.635 kb on + strand at 3749.635 kb on + strand at 3749.635 kb on + strand at 3749.635 kb on + strand at 3749.636 kb on - strand at 3749.836 kb on + strand, within ECD_03565 at 3749.836 kb on + strand, within ECD_03565 at 3749.837 kb on - strand, within ECD_03565 at 3749.901 kb on + strand, within ECD_03565 at 3749.901 kb on + strand, within ECD_03565 at 3749.901 kb on + strand, within ECD_03565 at 3749.901 kb on + strand, within ECD_03565 at 3749.902 kb on - strand, within ECD_03565 at 3749.902 kb on - strand, within ECD_03565 at 3749.902 kb on - strand, within ECD_03565 at 3749.902 kb on - strand, within ECD_03565 at 3749.902 kb on - strand, within ECD_03565 at 3749.902 kb on - strand, within ECD_03565 at 3750.019 kb on + strand, within ECD_03565 at 3750.020 kb on - strand, within ECD_03565 at 3750.049 kb on - strand, within ECD_03565 at 3750.049 kb on - strand, within ECD_03565 at 3750.076 kb on - strand, within ECD_03565 at 3750.076 kb on - strand, within ECD_03565 at 3750.076 kb on - strand, within ECD_03565 at 3750.086 kb on + strand, within ECD_03565 at 3750.092 kb on - strand, within ECD_03565 at 3750.129 kb on + strand, within ECD_03565 at 3750.129 kb on + strand, within ECD_03565 at 3750.129 kb on + strand, within ECD_03565 at 3750.129 kb on + strand, within ECD_03565 at 3750.129 kb on + strand, within ECD_03565 at 3750.130 kb on - strand, within ECD_03565 at 3750.155 kb on - strand, within ECD_03565 at 3750.161 kb on - strand, within ECD_03565 at 3750.180 kb on + strand, within ECD_03565 at 3750.180 kb on + strand, within ECD_03565 at 3750.180 kb on + strand, within ECD_03565 at 3750.181 kb on - strand, within ECD_03565 at 3750.190 kb on + strand, within ECD_03565 at 3750.190 kb on + strand, within ECD_03565 at 3750.190 kb on + strand, within ECD_03565 at 3750.191 kb on - strand, within ECD_03565 at 3750.199 kb on - strand, within ECD_03565 at 3750.199 kb on - strand, within ECD_03565 at 3750.199 kb on - strand, within ECD_03565 at 3750.199 kb on - strand, within ECD_03565 at 3750.276 kb on + strand, within ECD_03565 at 3750.280 kb on - strand, within ECD_03565 at 3750.429 kb on + strand, within ECD_03565 at 3750.430 kb on - strand, within ECD_03565 at 3750.468 kb on + strand, within ECD_03565 at 3750.468 kb on + strand, within ECD_03565 at 3750.468 kb on + strand, within ECD_03565 at 3750.468 kb on + strand, within ECD_03565 at 3750.468 kb on + strand, within ECD_03565 at 3750.468 kb on + strand, within ECD_03565 at 3750.469 kb on - strand, within ECD_03565 at 3750.515 kb on + strand, within ECD_03565 at 3750.515 kb on + strand, within ECD_03565
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,747,704 - ECD_03563 0.55 +0.1 3,747,711 + ECD_03563 0.55 +0.0 3,747,711 + ECD_03563 0.55 +0.6 3,747,712 - ECD_03563 0.55 -0.5 3,747,833 - ECD_03563 0.62 +0.6 3,747,984 - ECD_03563 0.71 -0.3 3,748,106 + ECD_03563 0.78 +0.8 3,748,107 - ECD_03563 0.78 +0.8 3,748,126 + ECD_03563 0.79 +1.9 3,748,127 - ECD_03563 0.79 +0.3 3,748,127 - ECD_03563 0.79 +0.5 3,748,127 - ECD_03563 0.79 +0.5 3,748,129 + ECD_03563 0.79 -0.0 3,748,130 - ECD_03563 0.79 +0.3 3,748,211 + ECD_03563 0.84 +1.4 3,748,279 - ECD_03563 0.88 +0.8 3,748,332 - -0.2 3,748,380 + +1.2 3,748,489 - +0.0 3,748,499 + -0.5 3,748,500 - -0.1 3,748,527 - +0.2 3,748,537 - +0.1 3,748,701 - +0.4 3,748,764 - ECD_03564 0.13 -1.2 3,748,767 + ECD_03564 0.13 +0.5 3,748,767 + ECD_03564 0.13 -0.4 3,748,767 + ECD_03564 0.13 +0.0 3,748,767 + ECD_03564 0.13 +1.7 3,748,767 + ECD_03564 0.13 -0.2 3,748,845 + ECD_03564 0.22 +0.5 3,748,846 - ECD_03564 0.22 +0.3 3,748,847 + ECD_03564 0.22 -0.0 3,748,847 + ECD_03564 0.22 +0.4 3,748,847 + ECD_03564 0.22 -0.2 3,748,853 - ECD_03564 0.23 +0.4 3,748,913 + ECD_03564 0.29 +0.4 3,748,947 + ECD_03564 0.33 +0.3 3,749,040 + ECD_03564 0.44 +1.8 3,749,042 + ECD_03564 0.44 +0.3 3,749,169 + ECD_03564 0.58 +0.6 3,749,169 + ECD_03564 0.58 +0.0 3,749,227 + ECD_03564 0.65 +0.2 3,749,264 + ECD_03564 0.69 +0.5 3,749,285 + ECD_03564 0.71 +0.9 3,749,343 + ECD_03564 0.78 +0.6 3,749,344 - ECD_03564 0.78 +0.5 3,749,346 + ECD_03564 0.78 -0.0 3,749,347 - ECD_03564 0.78 -0.4 3,749,380 + ECD_03564 0.82 -0.7 3,749,383 + ECD_03564 0.82 -0.1 3,749,384 - ECD_03564 0.82 +0.1 3,749,384 - ECD_03564 0.82 +0.9 3,749,468 + -0.1 3,749,497 + +4.9 3,749,541 + -0.2 3,749,546 + +0.5 3,749,593 + +1.9 3,749,593 + -1.1 3,749,593 + -0.4 3,749,594 - -0.1 3,749,594 - -0.8 3,749,635 + +0.9 3,749,635 + +0.0 3,749,635 + +1.3 3,749,635 + +0.1 3,749,635 + +1.0 3,749,635 + +1.5 3,749,635 + +1.8 3,749,636 - +0.1 3,749,836 + ECD_03565 0.22 +0.5 3,749,836 + ECD_03565 0.22 +0.6 3,749,837 - ECD_03565 0.22 +0.4 3,749,901 + ECD_03565 0.27 -1.2 3,749,901 + ECD_03565 0.27 +0.7 3,749,901 + ECD_03565 0.27 +0.5 3,749,901 + ECD_03565 0.27 +0.5 3,749,902 - ECD_03565 0.27 -1.0 3,749,902 - ECD_03565 0.27 +0.6 3,749,902 - ECD_03565 0.27 +0.4 3,749,902 - ECD_03565 0.27 +0.9 3,749,902 - ECD_03565 0.27 +0.2 3,749,902 - ECD_03565 0.27 -0.8 3,750,019 + ECD_03565 0.36 +0.3 3,750,020 - ECD_03565 0.36 +1.0 3,750,049 - ECD_03565 0.38 -0.8 3,750,049 - ECD_03565 0.38 +0.5 3,750,076 - ECD_03565 0.41 -0.1 3,750,076 - ECD_03565 0.41 +0.2 3,750,076 - ECD_03565 0.41 -0.3 3,750,086 + ECD_03565 0.41 +0.2 3,750,092 - ECD_03565 0.42 -0.5 3,750,129 + ECD_03565 0.45 -0.6 3,750,129 + ECD_03565 0.45 +0.9 3,750,129 + ECD_03565 0.45 +0.5 3,750,129 + ECD_03565 0.45 +0.7 3,750,129 + ECD_03565 0.45 +0.5 3,750,130 - ECD_03565 0.45 -0.3 3,750,155 - ECD_03565 0.46 +1.2 3,750,161 - ECD_03565 0.47 -1.9 3,750,180 + ECD_03565 0.48 -0.1 3,750,180 + ECD_03565 0.48 +0.7 3,750,180 + ECD_03565 0.48 +0.6 3,750,181 - ECD_03565 0.48 -0.0 3,750,190 + ECD_03565 0.49 +0.1 3,750,190 + ECD_03565 0.49 +0.2 3,750,190 + ECD_03565 0.49 +0.0 3,750,191 - ECD_03565 0.49 +0.7 3,750,199 - ECD_03565 0.50 -0.3 3,750,199 - ECD_03565 0.50 +0.3 3,750,199 - ECD_03565 0.50 +0.3 3,750,199 - ECD_03565 0.50 +1.8 3,750,276 + ECD_03565 0.56 +0.1 3,750,280 - ECD_03565 0.56 -1.4 3,750,429 + ECD_03565 0.67 +0.1 3,750,430 - ECD_03565 0.67 +1.2 3,750,468 + ECD_03565 0.70 +1.0 3,750,468 + ECD_03565 0.70 -0.3 3,750,468 + ECD_03565 0.70 +0.6 3,750,468 + ECD_03565 0.70 -0.3 3,750,468 + ECD_03565 0.70 +0.5 3,750,468 + ECD_03565 0.70 -0.6 3,750,469 - ECD_03565 0.70 +0.3 3,750,515 + ECD_03565 0.74 +0.5 3,750,515 + ECD_03565 0.74 +1.0
Or see this region's nucleotide sequence