Strain Fitness in Escherichia coli BL21 around ECD_03364

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03363 and ECD_03364 are separated by 367 nucleotidesECD_03364 and ECD_03365 are separated by 369 nucleotides ECD_03363: ECD_03363 - transcriptional activator of gadA and gadBC; repressor of gadX, at 3,525,077 to 3,525,805 _03363 ECD_03364: ECD_03364 - acid resistance regulon transcriptional activator; autoactivator, at 3,526,173 to 3,526,997 _03364 ECD_03365: ECD_03365 - glutamate decarboxylase A, PLP-dependent, at 3,527,367 to 3,528,767 _03365 Position (kb) 3526 3527Strain fitness (log2 ratio) -1 0 1 2at 3525.191 kb on - strand, within ECD_03363at 3525.191 kb on - strand, within ECD_03363at 3525.193 kb on + strand, within ECD_03363at 3525.193 kb on + strand, within ECD_03363at 3525.194 kb on - strand, within ECD_03363at 3525.319 kb on - strand, within ECD_03363at 3525.371 kb on - strand, within ECD_03363at 3525.374 kb on - strand, within ECD_03363at 3525.374 kb on - strand, within ECD_03363at 3525.585 kb on - strand, within ECD_03363at 3525.835 kb on - strandat 3525.850 kb on + strandat 3526.182 kb on + strandat 3526.231 kb on + strandat 3526.232 kb on + strandat 3526.283 kb on - strand, within ECD_03364at 3526.322 kb on - strand, within ECD_03364at 3526.441 kb on + strand, within ECD_03364at 3526.442 kb on - strand, within ECD_03364at 3526.536 kb on - strand, within ECD_03364at 3526.539 kb on - strand, within ECD_03364at 3526.605 kb on - strand, within ECD_03364at 3526.863 kb on - strand, within ECD_03364at 3527.145 kb on - strandat 3527.287 kb on + strandat 3527.291 kb on - strandat 3527.302 kb on + strandat 3527.360 kb on + strandat 3527.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,525,191 - ECD_03363 0.16 +0.2
3,525,191 - ECD_03363 0.16 -0.4
3,525,193 + ECD_03363 0.16 +2.2
3,525,193 + ECD_03363 0.16 -0.4
3,525,194 - ECD_03363 0.16 +1.4
3,525,319 - ECD_03363 0.33 +0.5
3,525,371 - ECD_03363 0.40 -0.5
3,525,374 - ECD_03363 0.41 -0.5
3,525,374 - ECD_03363 0.41 +0.3
3,525,585 - ECD_03363 0.70 -1.2
3,525,835 - -0.1
3,525,850 + -0.1
3,526,182 + +0.1
3,526,231 + +0.7
3,526,232 + +1.7
3,526,283 - ECD_03364 0.13 +0.1
3,526,322 - ECD_03364 0.18 +0.2
3,526,441 + ECD_03364 0.32 -0.0
3,526,442 - ECD_03364 0.33 +0.4
3,526,536 - ECD_03364 0.44 -0.3
3,526,539 - ECD_03364 0.44 -0.1
3,526,605 - ECD_03364 0.52 +0.2
3,526,863 - ECD_03364 0.84 -1.5
3,527,145 - -1.1
3,527,287 + +0.2
3,527,291 - +0.1
3,527,302 + +0.3
3,527,360 + +0.1
3,527,360 + +0.0

Or see this region's nucleotide sequence