Strain Fitness in Escherichia coli BL21 around ECD_03363

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03362 and ECD_03363 are separated by 362 nucleotidesECD_03363 and ECD_03364 are separated by 367 nucleotides ECD_03362: ECD_03362 - anaerobic multidrug efflux transporter, ArcA-regulated, at 3,521,601 to 3,524,714 _03362 ECD_03363: ECD_03363 - transcriptional activator of gadA and gadBC; repressor of gadX, at 3,525,077 to 3,525,805 _03363 ECD_03364: ECD_03364 - acid resistance regulon transcriptional activator; autoactivator, at 3,526,173 to 3,526,997 _03364 Position (kb) 3525 3526Strain fitness (log2 ratio) -1 0 1 2 3 4at 3524.180 kb on - strand, within ECD_03362at 3524.185 kb on - strand, within ECD_03362at 3524.268 kb on + strand, within ECD_03362at 3524.269 kb on - strand, within ECD_03362at 3524.357 kb on - strand, within ECD_03362at 3524.357 kb on - strand, within ECD_03362at 3524.360 kb on + strand, within ECD_03362at 3524.360 kb on + strand, within ECD_03362at 3524.360 kb on + strand, within ECD_03362at 3524.361 kb on - strand, within ECD_03362at 3524.361 kb on - strand, within ECD_03362at 3524.370 kb on + strand, within ECD_03362at 3524.653 kb on - strandat 3524.677 kb on + strandat 3524.678 kb on - strandat 3524.702 kb on + strandat 3524.702 kb on + strandat 3524.719 kb on + strandat 3524.729 kb on + strandat 3524.729 kb on + strandat 3524.729 kb on + strandat 3524.808 kb on - strandat 3524.817 kb on - strandat 3524.817 kb on - strandat 3524.817 kb on - strandat 3524.820 kb on - strandat 3524.820 kb on - strandat 3525.129 kb on + strandat 3525.130 kb on - strandat 3525.130 kb on - strandat 3525.130 kb on - strandat 3525.132 kb on + strandat 3525.133 kb on - strandat 3525.149 kb on + strandat 3525.156 kb on + strand, within ECD_03363at 3525.157 kb on - strand, within ECD_03363at 3525.163 kb on + strand, within ECD_03363at 3525.164 kb on - strand, within ECD_03363at 3525.164 kb on - strand, within ECD_03363at 3525.170 kb on - strand, within ECD_03363at 3525.170 kb on - strand, within ECD_03363at 3525.171 kb on + strand, within ECD_03363at 3525.191 kb on - strand, within ECD_03363at 3525.191 kb on - strand, within ECD_03363at 3525.193 kb on + strand, within ECD_03363at 3525.193 kb on + strand, within ECD_03363at 3525.194 kb on - strand, within ECD_03363at 3525.319 kb on - strand, within ECD_03363at 3525.371 kb on - strand, within ECD_03363at 3525.374 kb on - strand, within ECD_03363at 3525.374 kb on - strand, within ECD_03363at 3525.585 kb on - strand, within ECD_03363at 3525.835 kb on - strandat 3525.850 kb on + strandat 3526.182 kb on + strandat 3526.231 kb on + strandat 3526.232 kb on + strandat 3526.283 kb on - strand, within ECD_03364at 3526.322 kb on - strand, within ECD_03364at 3526.441 kb on + strand, within ECD_03364at 3526.442 kb on - strand, within ECD_03364at 3526.536 kb on - strand, within ECD_03364at 3526.539 kb on - strand, within ECD_03364at 3526.605 kb on - strand, within ECD_03364

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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3,524,180 - ECD_03362 0.83 +0.8
3,524,185 - ECD_03362 0.83 -0.5
3,524,268 + ECD_03362 0.86 +1.7
3,524,269 - ECD_03362 0.86 -0.0
3,524,357 - ECD_03362 0.89 +2.1
3,524,357 - ECD_03362 0.89 +0.5
3,524,360 + ECD_03362 0.89 -0.5
3,524,360 + ECD_03362 0.89 +1.9
3,524,360 + ECD_03362 0.89 +4.4
3,524,361 - ECD_03362 0.89 +0.0
3,524,361 - ECD_03362 0.89 -0.1
3,524,370 + ECD_03362 0.89 +0.7
3,524,653 - +0.3
3,524,677 + -0.4
3,524,678 - +0.6
3,524,702 + -0.6
3,524,702 + +1.1
3,524,719 + +1.0
3,524,729 + +0.8
3,524,729 + +0.4
3,524,729 + +0.4
3,524,808 - +1.1
3,524,817 - -0.3
3,524,817 - +0.2
3,524,817 - +0.7
3,524,820 - +1.1
3,524,820 - +3.0
3,525,129 + -0.4
3,525,130 - +2.3
3,525,130 - -0.1
3,525,130 - -0.6
3,525,132 + +0.8
3,525,133 - -0.7
3,525,149 + -1.1
3,525,156 + ECD_03363 0.11 -0.1
3,525,157 - ECD_03363 0.11 +1.8
3,525,163 + ECD_03363 0.12 +0.5
3,525,164 - ECD_03363 0.12 +4.3
3,525,164 - ECD_03363 0.12 -1.5
3,525,170 - ECD_03363 0.13 +0.6
3,525,170 - ECD_03363 0.13 +1.0
3,525,171 + ECD_03363 0.13 +0.3
3,525,191 - ECD_03363 0.16 +0.2
3,525,191 - ECD_03363 0.16 -0.4
3,525,193 + ECD_03363 0.16 +2.2
3,525,193 + ECD_03363 0.16 -0.4
3,525,194 - ECD_03363 0.16 +1.4
3,525,319 - ECD_03363 0.33 +0.5
3,525,371 - ECD_03363 0.40 -0.5
3,525,374 - ECD_03363 0.41 -0.5
3,525,374 - ECD_03363 0.41 +0.3
3,525,585 - ECD_03363 0.70 -1.2
3,525,835 - -0.1
3,525,850 + -0.1
3,526,182 + +0.1
3,526,231 + +0.7
3,526,232 + +1.7
3,526,283 - ECD_03364 0.13 +0.1
3,526,322 - ECD_03364 0.18 +0.2
3,526,441 + ECD_03364 0.32 -0.0
3,526,442 - ECD_03364 0.33 +0.4
3,526,536 - ECD_03364 0.44 -0.3
3,526,539 - ECD_03364 0.44 -0.1
3,526,605 - ECD_03364 0.52 +0.2

Or see this region's nucleotide sequence