Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03182 and ECD_03183 overlap by 8 nucleotides ECD_03183 and ECD_03184 are separated by 14 nucleotides ECD_03184 and ECD_03185 overlap by 4 nucleotides ECD_03185 and ECD_03186 overlap by 1 nucleotides
ECD_03182: ECD_03182 - putative general secretory pathway component, cryptic, at 3,322,578 to 3,323,165
_03182
ECD_03183: ECD_03183 - general secretory pathway component, cryptic, at 3,323,158 to 3,324,141
_03183
ECD_03184: ECD_03184 - general secretory pathway component, cryptic, at 3,324,156 to 3,325,319
_03184
ECD_03185: ECD_03185 - general secretory pathway component, cryptic, at 3,325,316 to 3,325,777
_03185
ECD_03186: ECD_03186 - bifunctional prepilin leader peptidase/ methylase, at 3,325,777 to 3,326,454
_03186
Position (kb)
3324
3325
3326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3323.163 kb on + strand at 3323.195 kb on + strand at 3323.195 kb on + strand at 3323.196 kb on - strand at 3323.196 kb on - strand at 3323.196 kb on - strand at 3323.204 kb on + strand at 3323.205 kb on - strand at 3323.280 kb on - strand, within ECD_03183 at 3323.302 kb on + strand, within ECD_03183 at 3323.308 kb on - strand, within ECD_03183 at 3323.355 kb on + strand, within ECD_03183 at 3323.535 kb on - strand, within ECD_03183 at 3323.535 kb on - strand, within ECD_03183 at 3323.608 kb on + strand, within ECD_03183 at 3323.608 kb on + strand, within ECD_03183 at 3323.610 kb on + strand, within ECD_03183 at 3323.610 kb on + strand, within ECD_03183 at 3323.652 kb on + strand, within ECD_03183 at 3323.721 kb on - strand, within ECD_03183 at 3323.721 kb on - strand, within ECD_03183 at 3323.721 kb on - strand, within ECD_03183 at 3323.729 kb on + strand, within ECD_03183 at 3323.738 kb on + strand, within ECD_03183 at 3323.753 kb on - strand, within ECD_03183 at 3323.771 kb on - strand, within ECD_03183 at 3323.799 kb on + strand, within ECD_03183 at 3323.800 kb on - strand, within ECD_03183 at 3323.811 kb on + strand, within ECD_03183 at 3323.812 kb on - strand, within ECD_03183 at 3323.812 kb on - strand, within ECD_03183 at 3323.814 kb on + strand, within ECD_03183 at 3323.815 kb on - strand, within ECD_03183 at 3323.832 kb on + strand, within ECD_03183 at 3323.853 kb on - strand, within ECD_03183 at 3323.921 kb on + strand, within ECD_03183 at 3324.012 kb on + strand, within ECD_03183 at 3324.042 kb on + strand, within ECD_03183 at 3324.136 kb on + strand at 3324.137 kb on - strand at 3324.139 kb on + strand at 3324.146 kb on - strand at 3324.146 kb on - strand at 3324.178 kb on + strand at 3324.178 kb on + strand at 3324.178 kb on + strand at 3324.178 kb on + strand at 3324.179 kb on - strand at 3324.179 kb on - strand at 3324.179 kb on - strand at 3324.179 kb on - strand at 3324.179 kb on - strand at 3324.234 kb on - strand at 3324.234 kb on - strand at 3324.234 kb on - strand at 3324.238 kb on + strand at 3324.238 kb on + strand at 3324.238 kb on + strand at 3324.238 kb on + strand at 3324.239 kb on - strand at 3324.251 kb on + strand at 3324.251 kb on + strand at 3324.251 kb on + strand at 3324.251 kb on + strand at 3324.252 kb on - strand at 3324.252 kb on - strand at 3324.252 kb on - strand at 3324.252 kb on - strand at 3324.252 kb on - strand at 3324.252 kb on - strand at 3324.340 kb on + strand, within ECD_03184 at 3324.341 kb on - strand, within ECD_03184 at 3324.342 kb on + strand, within ECD_03184 at 3324.394 kb on + strand, within ECD_03184 at 3324.395 kb on - strand, within ECD_03184 at 3324.395 kb on - strand, within ECD_03184 at 3324.514 kb on - strand, within ECD_03184 at 3324.526 kb on + strand, within ECD_03184 at 3324.527 kb on - strand, within ECD_03184 at 3324.530 kb on + strand, within ECD_03184 at 3324.531 kb on - strand, within ECD_03184 at 3324.531 kb on - strand, within ECD_03184 at 3324.574 kb on - strand, within ECD_03184 at 3324.589 kb on + strand, within ECD_03184 at 3324.589 kb on + strand, within ECD_03184 at 3324.590 kb on - strand, within ECD_03184 at 3324.590 kb on - strand, within ECD_03184 at 3324.593 kb on + strand, within ECD_03184 at 3324.593 kb on + strand, within ECD_03184 at 3324.593 kb on + strand, within ECD_03184 at 3324.593 kb on + strand, within ECD_03184 at 3324.594 kb on - strand, within ECD_03184 at 3324.710 kb on + strand, within ECD_03184 at 3324.710 kb on + strand, within ECD_03184 at 3324.711 kb on - strand, within ECD_03184 at 3324.721 kb on - strand, within ECD_03184 at 3324.727 kb on + strand, within ECD_03184 at 3324.727 kb on + strand, within ECD_03184 at 3324.727 kb on + strand, within ECD_03184 at 3324.727 kb on + strand, within ECD_03184 at 3324.727 kb on + strand, within ECD_03184 at 3324.730 kb on + strand, within ECD_03184 at 3324.731 kb on - strand, within ECD_03184 at 3324.731 kb on - strand, within ECD_03184 at 3324.731 kb on - strand, within ECD_03184 at 3324.761 kb on + strand, within ECD_03184 at 3324.762 kb on - strand, within ECD_03184 at 3324.795 kb on + strand, within ECD_03184 at 3324.823 kb on - strand, within ECD_03184 at 3324.898 kb on + strand, within ECD_03184 at 3324.898 kb on + strand, within ECD_03184 at 3324.899 kb on - strand, within ECD_03184 at 3324.959 kb on + strand, within ECD_03184 at 3324.959 kb on + strand, within ECD_03184 at 3324.965 kb on + strand, within ECD_03184 at 3324.966 kb on - strand, within ECD_03184 at 3324.966 kb on - strand, within ECD_03184 at 3325.015 kb on - strand, within ECD_03184 at 3325.053 kb on + strand, within ECD_03184 at 3325.080 kb on + strand, within ECD_03184 at 3325.105 kb on - strand, within ECD_03184 at 3325.111 kb on + strand, within ECD_03184 at 3325.111 kb on + strand, within ECD_03184 at 3325.147 kb on + strand, within ECD_03184 at 3325.161 kb on + strand, within ECD_03184 at 3325.162 kb on - strand, within ECD_03184 at 3325.162 kb on - strand, within ECD_03184 at 3325.203 kb on - strand at 3325.237 kb on + strand at 3325.238 kb on - strand at 3325.238 kb on - strand at 3325.291 kb on + strand at 3325.292 kb on - strand at 3325.303 kb on - strand at 3325.416 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.433 kb on + strand, within ECD_03185 at 3325.433 kb on + strand, within ECD_03185 at 3325.434 kb on - strand, within ECD_03185 at 3325.434 kb on - strand, within ECD_03185 at 3325.552 kb on + strand, within ECD_03185 at 3325.553 kb on - strand, within ECD_03185 at 3325.616 kb on - strand, within ECD_03185 at 3325.688 kb on + strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.776 kb on - strand at 3325.935 kb on + strand, within ECD_03186 at 3325.935 kb on + strand, within ECD_03186 at 3325.935 kb on + strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3326.024 kb on - strand, within ECD_03186 at 3326.117 kb on + strand, within ECD_03186 at 3326.118 kb on - strand, within ECD_03186 at 3326.118 kb on - strand, within ECD_03186 at 3326.121 kb on + strand, within ECD_03186 at 3326.121 kb on + strand, within ECD_03186 at 3326.161 kb on + strand, within ECD_03186 at 3326.200 kb on + strand, within ECD_03186 at 3326.217 kb on - strand, within ECD_03186 at 3326.258 kb on + strand, within ECD_03186 at 3326.258 kb on + strand, within ECD_03186 at 3326.306 kb on + strand, within ECD_03186
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,323,163 + -0.1 3,323,195 + -1.4 3,323,195 + +0.2 3,323,196 - +3.6 3,323,196 - +0.4 3,323,196 - +0.5 3,323,204 + -0.8 3,323,205 - -0.9 3,323,280 - ECD_03183 0.12 +1.1 3,323,302 + ECD_03183 0.15 +0.3 3,323,308 - ECD_03183 0.15 -0.1 3,323,355 + ECD_03183 0.20 +0.2 3,323,535 - ECD_03183 0.38 -0.5 3,323,535 - ECD_03183 0.38 +0.1 3,323,608 + ECD_03183 0.46 +0.8 3,323,608 + ECD_03183 0.46 +0.4 3,323,610 + ECD_03183 0.46 +0.7 3,323,610 + ECD_03183 0.46 +0.5 3,323,652 + ECD_03183 0.50 +0.5 3,323,721 - ECD_03183 0.57 -0.1 3,323,721 - ECD_03183 0.57 +1.4 3,323,721 - ECD_03183 0.57 -1.1 3,323,729 + ECD_03183 0.58 +0.1 3,323,738 + ECD_03183 0.59 -0.3 3,323,753 - ECD_03183 0.60 +0.4 3,323,771 - ECD_03183 0.62 -0.6 3,323,799 + ECD_03183 0.65 +0.1 3,323,800 - ECD_03183 0.65 +0.7 3,323,811 + ECD_03183 0.66 -0.1 3,323,812 - ECD_03183 0.66 -0.6 3,323,812 - ECD_03183 0.66 -0.0 3,323,814 + ECD_03183 0.67 +0.2 3,323,815 - ECD_03183 0.67 +2.5 3,323,832 + ECD_03183 0.68 +0.9 3,323,853 - ECD_03183 0.71 +1.5 3,323,921 + ECD_03183 0.78 +0.1 3,324,012 + ECD_03183 0.87 -0.1 3,324,042 + ECD_03183 0.90 +0.1 3,324,136 + -0.9 3,324,137 - +0.3 3,324,139 + +0.3 3,324,146 - +1.5 3,324,146 - -0.7 3,324,178 + -0.9 3,324,178 + -0.8 3,324,178 + +0.7 3,324,178 + +1.2 3,324,179 - -0.1 3,324,179 - -1.1 3,324,179 - +1.7 3,324,179 - +0.4 3,324,179 - +0.2 3,324,234 - +0.2 3,324,234 - -0.4 3,324,234 - +0.5 3,324,238 + +0.4 3,324,238 + -0.3 3,324,238 + +0.0 3,324,238 + -0.7 3,324,239 - +0.1 3,324,251 + -1.1 3,324,251 + +0.7 3,324,251 + +0.4 3,324,251 + -0.4 3,324,252 - -0.1 3,324,252 - +0.9 3,324,252 - -0.7 3,324,252 - +1.6 3,324,252 - -0.4 3,324,252 - +0.2 3,324,340 + ECD_03184 0.16 -1.9 3,324,341 - ECD_03184 0.16 +0.0 3,324,342 + ECD_03184 0.16 +0.4 3,324,394 + ECD_03184 0.20 +0.3 3,324,395 - ECD_03184 0.21 +0.6 3,324,395 - ECD_03184 0.21 -3.0 3,324,514 - ECD_03184 0.31 -0.9 3,324,526 + ECD_03184 0.32 +1.6 3,324,527 - ECD_03184 0.32 -0.9 3,324,530 + ECD_03184 0.32 +0.1 3,324,531 - ECD_03184 0.32 -0.4 3,324,531 - ECD_03184 0.32 +0.1 3,324,574 - ECD_03184 0.36 +0.1 3,324,589 + ECD_03184 0.37 +0.4 3,324,589 + ECD_03184 0.37 -0.3 3,324,590 - ECD_03184 0.37 +0.3 3,324,590 - ECD_03184 0.37 -0.1 3,324,593 + ECD_03184 0.38 -1.3 3,324,593 + ECD_03184 0.38 -0.1 3,324,593 + ECD_03184 0.38 +0.4 3,324,593 + ECD_03184 0.38 +0.0 3,324,594 - ECD_03184 0.38 -0.6 3,324,710 + ECD_03184 0.48 -0.7 3,324,710 + ECD_03184 0.48 +0.1 3,324,711 - ECD_03184 0.48 -0.4 3,324,721 - ECD_03184 0.49 -0.1 3,324,727 + ECD_03184 0.49 -0.4 3,324,727 + ECD_03184 0.49 +0.5 3,324,727 + ECD_03184 0.49 -0.1 3,324,727 + ECD_03184 0.49 -1.7 3,324,727 + ECD_03184 0.49 +0.7 3,324,730 + ECD_03184 0.49 +0.2 3,324,731 - ECD_03184 0.49 +0.4 3,324,731 - ECD_03184 0.49 +0.1 3,324,731 - ECD_03184 0.49 -1.9 3,324,761 + ECD_03184 0.52 -1.0 3,324,762 - ECD_03184 0.52 +1.9 3,324,795 + ECD_03184 0.55 -0.2 3,324,823 - ECD_03184 0.57 +0.6 3,324,898 + ECD_03184 0.64 +0.1 3,324,898 + ECD_03184 0.64 +0.1 3,324,899 - ECD_03184 0.64 -0.4 3,324,959 + ECD_03184 0.69 -0.4 3,324,959 + ECD_03184 0.69 +0.7 3,324,965 + ECD_03184 0.70 +0.1 3,324,966 - ECD_03184 0.70 -0.7 3,324,966 - ECD_03184 0.70 +0.2 3,325,015 - ECD_03184 0.74 +0.3 3,325,053 + ECD_03184 0.77 -0.6 3,325,080 + ECD_03184 0.79 +0.5 3,325,105 - ECD_03184 0.82 -0.1 3,325,111 + ECD_03184 0.82 -0.2 3,325,111 + ECD_03184 0.82 -0.3 3,325,147 + ECD_03184 0.85 +0.5 3,325,161 + ECD_03184 0.86 +0.7 3,325,162 - ECD_03184 0.86 +0.9 3,325,162 - ECD_03184 0.86 -1.1 3,325,203 - -0.6 3,325,237 + -0.1 3,325,238 - +0.4 3,325,238 - -1.4 3,325,291 + +0.5 3,325,292 - -0.1 3,325,303 - +1.6 3,325,416 + ECD_03185 0.22 +0.4 3,325,429 + ECD_03185 0.24 +0.4 3,325,429 + ECD_03185 0.24 -0.9 3,325,429 + ECD_03185 0.24 +0.4 3,325,429 + ECD_03185 0.24 -0.2 3,325,433 + ECD_03185 0.25 +0.1 3,325,433 + ECD_03185 0.25 +0.3 3,325,434 - ECD_03185 0.26 +0.5 3,325,434 - ECD_03185 0.26 -0.7 3,325,552 + ECD_03185 0.51 +1.4 3,325,553 - ECD_03185 0.51 +0.2 3,325,616 - ECD_03185 0.65 -0.0 3,325,688 + ECD_03185 0.81 +1.3 3,325,689 - ECD_03185 0.81 +0.0 3,325,689 - ECD_03185 0.81 +0.1 3,325,689 - ECD_03185 0.81 +0.2 3,325,689 - ECD_03185 0.81 +0.0 3,325,776 - +0.4 3,325,935 + ECD_03186 0.23 +0.6 3,325,935 + ECD_03186 0.23 -0.4 3,325,935 + ECD_03186 0.23 +0.7 3,325,936 - ECD_03186 0.23 +0.2 3,325,936 - ECD_03186 0.23 -0.2 3,325,936 - ECD_03186 0.23 -0.2 3,325,936 - ECD_03186 0.23 -0.3 3,326,024 - ECD_03186 0.36 +0.2 3,326,117 + ECD_03186 0.50 +0.3 3,326,118 - ECD_03186 0.50 -0.4 3,326,118 - ECD_03186 0.50 -0.0 3,326,121 + ECD_03186 0.51 -0.2 3,326,121 + ECD_03186 0.51 -0.7 3,326,161 + ECD_03186 0.57 -0.5 3,326,200 + ECD_03186 0.62 +0.3 3,326,217 - ECD_03186 0.65 -1.3 3,326,258 + ECD_03186 0.71 -0.1 3,326,258 + ECD_03186 0.71 +0.2 3,326,306 + ECD_03186 0.78 +0.1
Or see this region's nucleotide sequence