Strain Fitness in Escherichia coli BL21 around ECD_02844

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02843 and ECD_02844 are separated by 354 nucleotidesECD_02844 and ECD_02845 are separated by 21 nucleotidesECD_02845 and ECD_02846 are separated by 4 nucleotides ECD_02843: ECD_02843 - glycolate transporter, at 2,979,836 to 2,981,518 _02843 ECD_02844: ECD_02844 - malate synthase G, at 2,981,873 to 2,984,044 _02844 ECD_02845: ECD_02845 - DUF336 family protein, at 2,984,066 to 2,984,470 _02845 ECD_02846: ECD_02846 - glycolate oxidase 4Fe-4S iron-sulfur cluster subunit, at 2,984,475 to 2,985,698 _02846 Position (kb) 2981 2982 2983 2984 2985Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2980.923 kb on - strand, within ECD_02843at 2981.055 kb on + strand, within ECD_02843at 2981.056 kb on - strand, within ECD_02843at 2981.216 kb on - strand, within ECD_02843at 2981.289 kb on - strand, within ECD_02843at 2981.299 kb on + strand, within ECD_02843at 2981.300 kb on - strand, within ECD_02843at 2981.373 kb on - strandat 2981.373 kb on - strandat 2981.373 kb on - strandat 2981.375 kb on + strandat 2981.375 kb on + strandat 2981.375 kb on + strandat 2981.375 kb on + strandat 2981.375 kb on + strandat 2981.375 kb on + strandat 2981.375 kb on + strandat 2981.376 kb on - strandat 2981.376 kb on - strandat 2981.377 kb on + strandat 2981.414 kb on + strandat 2981.441 kb on + strandat 2981.496 kb on + strandat 2981.496 kb on + strandat 2981.497 kb on - strandat 2981.497 kb on - strandat 2981.624 kb on + strandat 2981.645 kb on - strandat 2981.655 kb on + strandat 2981.662 kb on + strandat 2981.663 kb on - strandat 2981.766 kb on + strandat 2981.767 kb on - strandat 2981.828 kb on - strandat 2981.895 kb on - strandat 2981.909 kb on + strandat 2981.926 kb on - strandat 2981.958 kb on - strandat 2982.136 kb on + strand, within ECD_02844at 2982.137 kb on - strand, within ECD_02844at 2982.229 kb on - strand, within ECD_02844at 2982.290 kb on - strand, within ECD_02844at 2982.377 kb on + strand, within ECD_02844at 2982.378 kb on - strand, within ECD_02844at 2982.378 kb on - strand, within ECD_02844at 2982.386 kb on + strand, within ECD_02844at 2982.387 kb on - strand, within ECD_02844at 2982.387 kb on - strand, within ECD_02844at 2982.387 kb on - strand, within ECD_02844at 2982.489 kb on + strand, within ECD_02844at 2982.489 kb on + strand, within ECD_02844at 2982.489 kb on + strand, within ECD_02844at 2982.490 kb on - strand, within ECD_02844at 2982.490 kb on - strand, within ECD_02844at 2982.490 kb on - strand, within ECD_02844at 2982.490 kb on - strand, within ECD_02844at 2982.530 kb on - strand, within ECD_02844at 2982.580 kb on + strand, within ECD_02844at 2982.580 kb on + strand, within ECD_02844at 2982.583 kb on + strand, within ECD_02844at 2982.583 kb on + strand, within ECD_02844at 2982.583 kb on + strand, within ECD_02844at 2982.584 kb on - strand, within ECD_02844at 2982.584 kb on - strand, within ECD_02844at 2982.592 kb on - strand, within ECD_02844at 2982.730 kb on + strand, within ECD_02844at 2982.736 kb on + strand, within ECD_02844at 2982.737 kb on - strand, within ECD_02844at 2982.737 kb on - strand, within ECD_02844at 2982.737 kb on - strand, within ECD_02844at 2982.883 kb on + strand, within ECD_02844at 2982.884 kb on - strand, within ECD_02844at 2982.885 kb on + strand, within ECD_02844at 2982.886 kb on - strand, within ECD_02844at 2982.886 kb on - strand, within ECD_02844at 2982.886 kb on - strand, within ECD_02844at 2982.886 kb on - strand, within ECD_02844at 2982.886 kb on - strand, within ECD_02844at 2982.886 kb on - strand, within ECD_02844at 2982.927 kb on + strand, within ECD_02844at 2983.090 kb on - strand, within ECD_02844at 2983.186 kb on - strand, within ECD_02844at 2983.253 kb on - strand, within ECD_02844at 2983.268 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.416 kb on - strand, within ECD_02844at 2983.451 kb on + strand, within ECD_02844at 2983.451 kb on + strand, within ECD_02844at 2983.451 kb on + strand, within ECD_02844at 2983.452 kb on - strand, within ECD_02844at 2983.472 kb on - strand, within ECD_02844at 2983.617 kb on + strand, within ECD_02844at 2983.617 kb on + strand, within ECD_02844at 2983.618 kb on - strand, within ECD_02844at 2983.618 kb on - strand, within ECD_02844at 2983.619 kb on + strand, within ECD_02844at 2983.629 kb on + strand, within ECD_02844at 2983.630 kb on - strand, within ECD_02844at 2983.630 kb on - strand, within ECD_02844at 2983.801 kb on + strand, within ECD_02844at 2983.802 kb on - strand, within ECD_02844at 2983.804 kb on - strand, within ECD_02844at 2984.050 kb on - strandat 2984.050 kb on - strandat 2984.199 kb on - strand, within ECD_02845at 2984.221 kb on + strand, within ECD_02845at 2984.247 kb on + strand, within ECD_02845at 2984.248 kb on - strand, within ECD_02845at 2984.254 kb on + strand, within ECD_02845at 2984.255 kb on - strand, within ECD_02845at 2984.302 kb on + strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.303 kb on - strand, within ECD_02845at 2984.304 kb on + strand, within ECD_02845at 2984.304 kb on + strand, within ECD_02845at 2984.304 kb on + strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.305 kb on - strand, within ECD_02845at 2984.340 kb on - strand, within ECD_02845at 2984.462 kb on - strandat 2984.659 kb on + strand, within ECD_02846at 2984.659 kb on + strand, within ECD_02846at 2984.659 kb on + strand, within ECD_02846at 2984.660 kb on - strand, within ECD_02846at 2984.660 kb on - strand, within ECD_02846at 2984.660 kb on - strand, within ECD_02846at 2984.711 kb on + strand, within ECD_02846at 2984.769 kb on + strand, within ECD_02846at 2984.770 kb on - strand, within ECD_02846at 2984.897 kb on - strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.898 kb on + strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.899 kb on - strand, within ECD_02846at 2984.926 kb on + strand, within ECD_02846at 2985.011 kb on + strand, within ECD_02846at 2985.011 kb on + strand, within ECD_02846at 2985.012 kb on - strand, within ECD_02846at 2985.014 kb on + strand, within ECD_02846at 2985.015 kb on - strand, within ECD_02846

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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2,980,923 - ECD_02843 0.65 -2.1
2,981,055 + ECD_02843 0.72 -3.4
2,981,056 - ECD_02843 0.72 +3.2
2,981,216 - ECD_02843 0.82 -2.1
2,981,289 - ECD_02843 0.86 -3.8
2,981,299 + ECD_02843 0.87 -1.8
2,981,300 - ECD_02843 0.87 -2.4
2,981,373 - -1.5
2,981,373 - -1.3
2,981,373 - -3.7
2,981,375 + -1.8
2,981,375 + +3.6
2,981,375 + +3.3
2,981,375 + -1.5
2,981,375 + -0.8
2,981,375 + -1.4
2,981,375 + -2.1
2,981,376 - -4.6
2,981,376 - -1.4
2,981,377 + +0.6
2,981,414 + -1.0
2,981,441 + -1.4
2,981,496 + -0.6
2,981,496 + -2.4
2,981,497 - -2.9
2,981,497 - -1.4
2,981,624 + +3.7
2,981,645 - -1.2
2,981,655 + +2.9
2,981,662 + +3.5
2,981,663 - +4.2
2,981,766 + -0.8
2,981,767 - +4.0
2,981,828 - +4.2
2,981,895 - -2.9
2,981,909 + -1.0
2,981,926 - -2.0
2,981,958 - -1.1
2,982,136 + ECD_02844 0.12 -1.2
2,982,137 - ECD_02844 0.12 -1.8
2,982,229 - ECD_02844 0.16 -2.4
2,982,290 - ECD_02844 0.19 -0.9
2,982,377 + ECD_02844 0.23 -0.5
2,982,378 - ECD_02844 0.23 -2.3
2,982,378 - ECD_02844 0.23 -3.7
2,982,386 + ECD_02844 0.24 +4.7
2,982,387 - ECD_02844 0.24 -0.7
2,982,387 - ECD_02844 0.24 +2.2
2,982,387 - ECD_02844 0.24 -0.9
2,982,489 + ECD_02844 0.28 +0.2
2,982,489 + ECD_02844 0.28 +2.9
2,982,489 + ECD_02844 0.28 +0.2
2,982,490 - ECD_02844 0.28 -1.3
2,982,490 - ECD_02844 0.28 +3.2
2,982,490 - ECD_02844 0.28 -1.1
2,982,490 - ECD_02844 0.28 -2.9
2,982,530 - ECD_02844 0.30 -1.7
2,982,580 + ECD_02844 0.33 +0.7
2,982,580 + ECD_02844 0.33 -1.5
2,982,583 + ECD_02844 0.33 +4.0
2,982,583 + ECD_02844 0.33 +4.0
2,982,583 + ECD_02844 0.33 -3.3
2,982,584 - ECD_02844 0.33 +1.7
2,982,584 - ECD_02844 0.33 -1.6
2,982,592 - ECD_02844 0.33 -3.3
2,982,730 + ECD_02844 0.39 +2.4
2,982,736 + ECD_02844 0.40 -1.7
2,982,737 - ECD_02844 0.40 -1.1
2,982,737 - ECD_02844 0.40 +4.8
2,982,737 - ECD_02844 0.40 -1.0
2,982,883 + ECD_02844 0.47 -0.8
2,982,884 - ECD_02844 0.47 -2.9
2,982,885 + ECD_02844 0.47 -1.3
2,982,886 - ECD_02844 0.47 -1.1
2,982,886 - ECD_02844 0.47 -0.9
2,982,886 - ECD_02844 0.47 -2.2
2,982,886 - ECD_02844 0.47 -1.8
2,982,886 - ECD_02844 0.47 +1.8
2,982,886 - ECD_02844 0.47 +2.9
2,982,927 + ECD_02844 0.49 -0.8
2,983,090 - ECD_02844 0.56 +2.0
2,983,186 - ECD_02844 0.60 +3.8
2,983,253 - ECD_02844 0.64 +1.8
2,983,268 - ECD_02844 0.64 +2.7
2,983,416 - ECD_02844 0.71 -1.0
2,983,416 - ECD_02844 0.71 -2.0
2,983,416 - ECD_02844 0.71 -2.3
2,983,416 - ECD_02844 0.71 +4.3
2,983,451 + ECD_02844 0.73 -0.8
2,983,451 + ECD_02844 0.73 -1.4
2,983,451 + ECD_02844 0.73 +2.3
2,983,452 - ECD_02844 0.73 +2.9
2,983,472 - ECD_02844 0.74 +3.8
2,983,617 + ECD_02844 0.80 +3.5
2,983,617 + ECD_02844 0.80 -1.7
2,983,618 - ECD_02844 0.80 -1.6
2,983,618 - ECD_02844 0.80 +4.1
2,983,619 + ECD_02844 0.80 -0.4
2,983,629 + ECD_02844 0.81 +4.3
2,983,630 - ECD_02844 0.81 -1.6
2,983,630 - ECD_02844 0.81 +3.2
2,983,801 + ECD_02844 0.89 -0.9
2,983,802 - ECD_02844 0.89 -1.0
2,983,804 - ECD_02844 0.89 +2.4
2,984,050 - -0.3
2,984,050 - +3.5
2,984,199 - ECD_02845 0.33 +4.0
2,984,221 + ECD_02845 0.38 +0.4
2,984,247 + ECD_02845 0.45 +3.4
2,984,248 - ECD_02845 0.45 -1.2
2,984,254 + ECD_02845 0.46 -0.7
2,984,255 - ECD_02845 0.47 -1.1
2,984,302 + ECD_02845 0.58 +3.5
2,984,303 - ECD_02845 0.59 -0.6
2,984,303 - ECD_02845 0.59 +3.3
2,984,303 - ECD_02845 0.59 -1.4
2,984,303 - ECD_02845 0.59 -4.0
2,984,303 - ECD_02845 0.59 -2.9
2,984,303 - ECD_02845 0.59 +0.6
2,984,303 - ECD_02845 0.59 +3.3
2,984,304 + ECD_02845 0.59 -2.1
2,984,304 + ECD_02845 0.59 +3.5
2,984,304 + ECD_02845 0.59 -1.1
2,984,305 - ECD_02845 0.59 +3.8
2,984,305 - ECD_02845 0.59 -1.8
2,984,305 - ECD_02845 0.59 -3.2
2,984,305 - ECD_02845 0.59 -1.4
2,984,305 - ECD_02845 0.59 -0.9
2,984,305 - ECD_02845 0.59 -1.9
2,984,305 - ECD_02845 0.59 -1.5
2,984,340 - ECD_02845 0.68 -2.3
2,984,462 - -1.6
2,984,659 + ECD_02846 0.15 -0.6
2,984,659 + ECD_02846 0.15 -1.4
2,984,659 + ECD_02846 0.15 -3.1
2,984,660 - ECD_02846 0.15 +2.0
2,984,660 - ECD_02846 0.15 -1.7
2,984,660 - ECD_02846 0.15 -2.3
2,984,711 + ECD_02846 0.19 +3.2
2,984,769 + ECD_02846 0.24 +4.8
2,984,770 - ECD_02846 0.24 +3.6
2,984,897 - ECD_02846 0.34 +1.8
2,984,898 + ECD_02846 0.35 -0.6
2,984,898 + ECD_02846 0.35 +3.8
2,984,898 + ECD_02846 0.35 -1.2
2,984,898 + ECD_02846 0.35 -1.1
2,984,898 + ECD_02846 0.35 +3.3
2,984,898 + ECD_02846 0.35 -2.1
2,984,899 - ECD_02846 0.35 -1.9
2,984,899 - ECD_02846 0.35 +2.9
2,984,899 - ECD_02846 0.35 -2.0
2,984,899 - ECD_02846 0.35 -0.3
2,984,899 - ECD_02846 0.35 +3.9
2,984,926 + ECD_02846 0.37 -0.5
2,985,011 + ECD_02846 0.44 +0.1
2,985,011 + ECD_02846 0.44 +2.8
2,985,012 - ECD_02846 0.44 -1.5
2,985,014 + ECD_02846 0.44 -2.3
2,985,015 - ECD_02846 0.44 +3.1

Or see this region's nucleotide sequence