Strain Fitness in Escherichia coli BL21 around ECD_02519

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02518 and ECD_02519 are separated by 310 nucleotidesECD_02519 and ECD_02520 are separated by 20 nucleotidesECD_02520 and ECD_02521 are separated by 0 nucleotides ECD_02518: ECD_02518 - 4-aminobutyrate aminotransferase, PLP-dependent, at 2,632,522 to 2,633,802 _02518 ECD_02519: ECD_02519 - gamma-aminobutyrate transporter, at 2,634,113 to 2,635,513 _02519 ECD_02520: ECD_02520 - transcriptional repressor of csiD, at 2,635,534 to 2,636,196 _02520 ECD_02521: ECD_02521 - uncharacterized protein, at 2,636,197 to 2,636,646 _02521 Position (kb) 2634 2635 2636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2633.164 kb on + strand, within ECD_02518at 2633.165 kb on - strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.184 kb on + strand, within ECD_02518at 2633.185 kb on - strand, within ECD_02518at 2633.185 kb on - strand, within ECD_02518at 2633.311 kb on - strand, within ECD_02518at 2633.375 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.413 kb on + strand, within ECD_02518at 2633.414 kb on - strand, within ECD_02518at 2633.414 kb on - strand, within ECD_02518at 2633.698 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.701 kb on + strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.702 kb on - strandat 2633.723 kb on + strandat 2633.723 kb on + strandat 2633.724 kb on - strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.804 kb on + strandat 2633.805 kb on - strandat 2633.805 kb on - strandat 2633.805 kb on - strandat 2633.805 kb on - strandat 2633.823 kb on + strandat 2633.823 kb on + strandat 2633.844 kb on + strandat 2634.043 kb on + strandat 2634.141 kb on + strandat 2634.181 kb on + strandat 2634.181 kb on + strandat 2634.181 kb on + strandat 2634.182 kb on - strandat 2634.182 kb on - strandat 2634.255 kb on + strand, within ECD_02519at 2634.256 kb on - strand, within ECD_02519at 2634.290 kb on - strand, within ECD_02519at 2634.290 kb on - strand, within ECD_02519at 2634.353 kb on + strand, within ECD_02519at 2634.353 kb on + strand, within ECD_02519at 2634.354 kb on - strand, within ECD_02519at 2634.386 kb on + strand, within ECD_02519at 2634.387 kb on - strand, within ECD_02519at 2634.388 kb on + strand, within ECD_02519at 2634.388 kb on + strand, within ECD_02519at 2634.388 kb on + strand, within ECD_02519at 2634.389 kb on - strand, within ECD_02519at 2634.389 kb on - strand, within ECD_02519at 2634.389 kb on - strand, within ECD_02519at 2634.404 kb on + strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.405 kb on - strand, within ECD_02519at 2634.495 kb on + strand, within ECD_02519at 2634.496 kb on - strand, within ECD_02519at 2634.532 kb on + strand, within ECD_02519at 2634.533 kb on - strand, within ECD_02519at 2634.537 kb on + strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.538 kb on - strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.540 kb on + strand, within ECD_02519at 2634.541 kb on - strand, within ECD_02519at 2634.611 kb on - strand, within ECD_02519at 2634.611 kb on - strand, within ECD_02519at 2634.635 kb on - strand, within ECD_02519at 2634.635 kb on - strand, within ECD_02519at 2634.650 kb on + strand, within ECD_02519at 2634.651 kb on - strand, within ECD_02519at 2634.721 kb on - strand, within ECD_02519at 2634.723 kb on + strand, within ECD_02519at 2634.723 kb on + strand, within ECD_02519at 2634.754 kb on + strand, within ECD_02519at 2634.811 kb on + strand, within ECD_02519at 2634.812 kb on - strand, within ECD_02519at 2634.812 kb on - strand, within ECD_02519at 2634.845 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.851 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.858 kb on - strand, within ECD_02519at 2634.868 kb on + strand, within ECD_02519at 2634.973 kb on - strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2634.993 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.028 kb on + strand, within ECD_02519at 2635.029 kb on - strand, within ECD_02519at 2635.049 kb on + strand, within ECD_02519at 2635.049 kb on + strand, within ECD_02519at 2635.050 kb on - strand, within ECD_02519at 2635.057 kb on - strand, within ECD_02519at 2635.115 kb on + strand, within ECD_02519at 2635.116 kb on - strand, within ECD_02519at 2635.129 kb on - strand, within ECD_02519at 2635.169 kb on + strand, within ECD_02519at 2635.170 kb on - strand, within ECD_02519at 2635.172 kb on + strand, within ECD_02519at 2635.172 kb on + strand, within ECD_02519at 2635.192 kb on + strand, within ECD_02519at 2635.192 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.239 kb on + strand, within ECD_02519at 2635.240 kb on - strand, within ECD_02519at 2635.341 kb on + strand, within ECD_02519at 2635.342 kb on - strand, within ECD_02519at 2635.344 kb on + strand, within ECD_02519at 2635.351 kb on + strand, within ECD_02519at 2635.351 kb on + strand, within ECD_02519at 2635.351 kb on + strand, within ECD_02519at 2635.352 kb on - strand, within ECD_02519at 2635.354 kb on + strand, within ECD_02519at 2635.354 kb on + strand, within ECD_02519at 2635.369 kb on - strand, within ECD_02519at 2635.377 kb on + strandat 2635.377 kb on + strandat 2635.377 kb on + strandat 2635.378 kb on - strandat 2635.398 kb on + strandat 2635.399 kb on - strandat 2635.399 kb on - strandat 2635.419 kb on + strandat 2635.419 kb on + strandat 2635.419 kb on + strandat 2635.422 kb on + strandat 2635.435 kb on + strandat 2635.435 kb on + strandat 2635.435 kb on + strandat 2635.435 kb on + strandat 2635.436 kb on - strandat 2635.438 kb on - strandat 2635.453 kb on + strandat 2635.453 kb on + strandat 2635.501 kb on + strandat 2635.501 kb on + strandat 2635.502 kb on - strandat 2635.504 kb on + strandat 2635.542 kb on + strandat 2635.542 kb on + strandat 2635.543 kb on - strandat 2635.578 kb on + strandat 2635.579 kb on - strandat 2635.581 kb on + strandat 2635.737 kb on + strand, within ECD_02520at 2635.737 kb on + strand, within ECD_02520at 2635.869 kb on + strand, within ECD_02520at 2635.938 kb on + strand, within ECD_02520at 2635.939 kb on - strand, within ECD_02520at 2635.969 kb on + strand, within ECD_02520at 2635.970 kb on - strand, within ECD_02520at 2635.970 kb on - strand, within ECD_02520at 2636.015 kb on - strand, within ECD_02520at 2636.022 kb on + strand, within ECD_02520at 2636.022 kb on + strand, within ECD_02520at 2636.023 kb on - strand, within ECD_02520at 2636.116 kb on - strand, within ECD_02520at 2636.151 kb on - strandat 2636.195 kb on - strandat 2636.195 kb on - strandat 2636.195 kb on - strandat 2636.195 kb on - strandat 2636.199 kb on - strandat 2636.199 kb on - strandat 2636.263 kb on - strand, within ECD_02521at 2636.280 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.285 kb on + strand, within ECD_02521at 2636.286 kb on - strand, within ECD_02521at 2636.349 kb on + strand, within ECD_02521at 2636.351 kb on + strand, within ECD_02521at 2636.352 kb on - strand, within ECD_02521at 2636.419 kb on - strand, within ECD_02521at 2636.419 kb on - strand, within ECD_02521

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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2,633,164 + ECD_02518 0.50 +0.1
2,633,165 - ECD_02518 0.50 +1.1
2,633,184 + ECD_02518 0.52 -0.1
2,633,184 + ECD_02518 0.52 +0.5
2,633,184 + ECD_02518 0.52 -1.1
2,633,185 - ECD_02518 0.52 -0.7
2,633,185 - ECD_02518 0.52 +0.5
2,633,311 - ECD_02518 0.62 +4.3
2,633,375 + ECD_02518 0.67 +0.3
2,633,413 + ECD_02518 0.70 -2.1
2,633,413 + ECD_02518 0.70 -2.1
2,633,413 + ECD_02518 0.70 -0.7
2,633,414 - ECD_02518 0.70 +0.4
2,633,414 - ECD_02518 0.70 +0.3
2,633,698 + -0.2
2,633,701 + -0.2
2,633,701 + -1.1
2,633,701 + -1.1
2,633,701 + -0.6
2,633,701 + +1.1
2,633,701 + -0.3
2,633,701 + -0.5
2,633,701 + +1.5
2,633,701 + +1.7
2,633,701 + -0.9
2,633,702 - +0.5
2,633,702 - -0.7
2,633,702 - -1.3
2,633,702 - +0.3
2,633,702 - +0.7
2,633,702 - -0.6
2,633,723 + +0.7
2,633,723 + +1.2
2,633,724 - +2.5
2,633,804 + +0.8
2,633,804 + -0.5
2,633,804 + +0.1
2,633,804 + -0.3
2,633,804 + +0.2
2,633,805 - -0.5
2,633,805 - -0.3
2,633,805 - -0.4
2,633,805 - -0.2
2,633,823 + -0.5
2,633,823 + -0.7
2,633,844 + +0.0
2,634,043 + +0.2
2,634,141 + +0.3
2,634,181 + +0.5
2,634,181 + +1.0
2,634,181 + +4.4
2,634,182 - -0.5
2,634,182 - +0.3
2,634,255 + ECD_02519 0.10 -0.5
2,634,256 - ECD_02519 0.10 +4.7
2,634,290 - ECD_02519 0.13 +0.5
2,634,290 - ECD_02519 0.13 +3.6
2,634,353 + ECD_02519 0.17 +3.3
2,634,353 + ECD_02519 0.17 -0.7
2,634,354 - ECD_02519 0.17 +0.5
2,634,386 + ECD_02519 0.19 +0.7
2,634,387 - ECD_02519 0.20 +1.0
2,634,388 + ECD_02519 0.20 +2.0
2,634,388 + ECD_02519 0.20 +0.7
2,634,388 + ECD_02519 0.20 -0.2
2,634,389 - ECD_02519 0.20 +0.9
2,634,389 - ECD_02519 0.20 -0.5
2,634,389 - ECD_02519 0.20 -1.5
2,634,404 + ECD_02519 0.21 +3.2
2,634,405 - ECD_02519 0.21 -0.7
2,634,405 - ECD_02519 0.21 -0.2
2,634,405 - ECD_02519 0.21 +0.4
2,634,405 - ECD_02519 0.21 +0.3
2,634,495 + ECD_02519 0.27 -0.8
2,634,496 - ECD_02519 0.27 -1.3
2,634,532 + ECD_02519 0.30 -0.7
2,634,533 - ECD_02519 0.30 -0.2
2,634,537 + ECD_02519 0.30 -2.2
2,634,538 - ECD_02519 0.30 +2.3
2,634,538 - ECD_02519 0.30 +0.5
2,634,538 - ECD_02519 0.30 +1.2
2,634,538 - ECD_02519 0.30 -0.2
2,634,540 + ECD_02519 0.30 +0.8
2,634,540 + ECD_02519 0.30 +0.7
2,634,540 + ECD_02519 0.30 -0.2
2,634,541 - ECD_02519 0.31 +0.0
2,634,611 - ECD_02519 0.36 +0.8
2,634,611 - ECD_02519 0.36 -0.8
2,634,635 - ECD_02519 0.37 +0.5
2,634,635 - ECD_02519 0.37 +0.5
2,634,650 + ECD_02519 0.38 -1.3
2,634,651 - ECD_02519 0.38 -0.6
2,634,721 - ECD_02519 0.43 +0.2
2,634,723 + ECD_02519 0.44 +0.5
2,634,723 + ECD_02519 0.44 -2.1
2,634,754 + ECD_02519 0.46 +1.5
2,634,811 + ECD_02519 0.50 +0.1
2,634,812 - ECD_02519 0.50 +2.0
2,634,812 - ECD_02519 0.50 -0.5
2,634,845 - ECD_02519 0.52 -0.8
2,634,851 - ECD_02519 0.53 -0.9
2,634,851 - ECD_02519 0.53 -0.2
2,634,851 - ECD_02519 0.53 +2.5
2,634,851 - ECD_02519 0.53 -0.5
2,634,858 - ECD_02519 0.53 -0.3
2,634,858 - ECD_02519 0.53 +0.9
2,634,858 - ECD_02519 0.53 +2.9
2,634,858 - ECD_02519 0.53 +0.5
2,634,858 - ECD_02519 0.53 -0.3
2,634,858 - ECD_02519 0.53 +0.1
2,634,858 - ECD_02519 0.53 +1.0
2,634,858 - ECD_02519 0.53 -0.1
2,634,868 + ECD_02519 0.54 +0.1
2,634,973 - ECD_02519 0.61 +0.3
2,634,993 + ECD_02519 0.63 +0.1
2,634,993 + ECD_02519 0.63 -1.1
2,634,993 + ECD_02519 0.63 +0.3
2,634,993 + ECD_02519 0.63 +0.2
2,634,993 + ECD_02519 0.63 -0.9
2,634,993 + ECD_02519 0.63 -0.8
2,634,993 + ECD_02519 0.63 +0.3
2,634,993 + ECD_02519 0.63 -2.1
2,634,993 + ECD_02519 0.63 -0.9
2,635,028 + ECD_02519 0.65 +0.3
2,635,028 + ECD_02519 0.65 +0.5
2,635,028 + ECD_02519 0.65 -0.8
2,635,028 + ECD_02519 0.65 -0.8
2,635,029 - ECD_02519 0.65 -0.4
2,635,049 + ECD_02519 0.67 +0.0
2,635,049 + ECD_02519 0.67 +1.1
2,635,050 - ECD_02519 0.67 -1.8
2,635,057 - ECD_02519 0.67 +0.3
2,635,115 + ECD_02519 0.72 +0.6
2,635,116 - ECD_02519 0.72 +1.5
2,635,129 - ECD_02519 0.73 +0.5
2,635,169 + ECD_02519 0.75 -1.0
2,635,170 - ECD_02519 0.75 +1.0
2,635,172 + ECD_02519 0.76 +0.8
2,635,172 + ECD_02519 0.76 -0.1
2,635,192 + ECD_02519 0.77 -0.2
2,635,192 + ECD_02519 0.77 -1.5
2,635,239 + ECD_02519 0.80 -0.5
2,635,239 + ECD_02519 0.80 +0.1
2,635,239 + ECD_02519 0.80 -2.1
2,635,239 + ECD_02519 0.80 -2.3
2,635,240 - ECD_02519 0.80 -0.8
2,635,341 + ECD_02519 0.88 -0.0
2,635,342 - ECD_02519 0.88 +1.5
2,635,344 + ECD_02519 0.88 -1.4
2,635,351 + ECD_02519 0.88 +0.5
2,635,351 + ECD_02519 0.88 +0.7
2,635,351 + ECD_02519 0.88 +0.5
2,635,352 - ECD_02519 0.88 +0.1
2,635,354 + ECD_02519 0.89 -0.5
2,635,354 + ECD_02519 0.89 -0.5
2,635,369 - ECD_02519 0.90 -2.5
2,635,377 + +0.1
2,635,377 + +0.4
2,635,377 + -1.5
2,635,378 - -0.8
2,635,398 + -1.4
2,635,399 - -0.5
2,635,399 - -1.1
2,635,419 + -1.3
2,635,419 + +4.4
2,635,419 + -0.2
2,635,422 + -1.2
2,635,435 + -1.3
2,635,435 + +0.8
2,635,435 + +0.4
2,635,435 + -0.3
2,635,436 - -0.7
2,635,438 - -0.1
2,635,453 + -1.4
2,635,453 + -0.4
2,635,501 + +0.3
2,635,501 + +0.1
2,635,502 - -0.5
2,635,504 + -1.7
2,635,542 + -0.6
2,635,542 + -1.1
2,635,543 - +0.3
2,635,578 + -2.3
2,635,579 - -0.5
2,635,581 + -0.9
2,635,737 + ECD_02520 0.31 -2.3
2,635,737 + ECD_02520 0.31 -0.3
2,635,869 + ECD_02520 0.51 -0.5
2,635,938 + ECD_02520 0.61 -2.8
2,635,939 - ECD_02520 0.61 -1.4
2,635,969 + ECD_02520 0.66 -1.1
2,635,970 - ECD_02520 0.66 +0.0
2,635,970 - ECD_02520 0.66 -1.8
2,636,015 - ECD_02520 0.73 +0.5
2,636,022 + ECD_02520 0.74 -1.1
2,636,022 + ECD_02520 0.74 -0.3
2,636,023 - ECD_02520 0.74 -0.4
2,636,116 - ECD_02520 0.88 -0.3
2,636,151 - -0.1
2,636,195 - -1.3
2,636,195 - -0.2
2,636,195 - -0.5
2,636,195 - +0.5
2,636,199 - -0.6
2,636,199 - +0.3
2,636,263 - ECD_02521 0.15 -0.6
2,636,280 + ECD_02521 0.18 +0.0
2,636,285 + ECD_02521 0.20 -1.1
2,636,285 + ECD_02521 0.20 +0.2
2,636,285 + ECD_02521 0.20 -2.1
2,636,285 + ECD_02521 0.20 -0.5
2,636,286 - ECD_02521 0.20 -0.1
2,636,349 + ECD_02521 0.34 +0.2
2,636,351 + ECD_02521 0.34 +0.5
2,636,352 - ECD_02521 0.34 +0.0
2,636,419 - ECD_02521 0.49 -1.1
2,636,419 - ECD_02521 0.49 -1.1

Or see this region's nucleotide sequence