Strain Fitness in Escherichia coli BL21 around ECD_02377

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02376 and ECD_02377 are separated by 14 nucleotidesECD_02377 and ECD_02378 are separated by 4 nucleotides ECD_02376: ECD_02376 - hydrogenase 4, membrane subunit, at 2,469,385 to 2,470,734 _02376 ECD_02377: ECD_02377 - hydrogenase 4, membrane subunit, at 2,470,749 to 2,471,399 _02377 ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984 _02378 Position (kb) 2470 2471 2472Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2469.794 kb on + strand, within ECD_02376at 2469.807 kb on + strand, within ECD_02376at 2469.808 kb on - strand, within ECD_02376at 2469.835 kb on + strand, within ECD_02376at 2469.969 kb on - strand, within ECD_02376at 2470.060 kb on + strand, within ECD_02376at 2470.165 kb on + strand, within ECD_02376at 2470.165 kb on + strand, within ECD_02376at 2470.166 kb on - strand, within ECD_02376at 2470.166 kb on - strand, within ECD_02376at 2470.334 kb on + strand, within ECD_02376at 2470.352 kb on - strand, within ECD_02376at 2470.392 kb on - strand, within ECD_02376at 2470.713 kb on - strandat 2470.733 kb on - strandat 2470.735 kb on + strandat 2470.735 kb on + strandat 2470.760 kb on + strandat 2470.761 kb on - strandat 2471.144 kb on - strand, within ECD_02377at 2471.284 kb on + strand, within ECD_02377at 2471.284 kb on + strand, within ECD_02377at 2471.352 kb on - strandat 2471.513 kb on + strandat 2471.514 kb on - strandat 2471.516 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.521 kb on - strandat 2471.521 kb on - strandat 2471.521 kb on - strandat 2471.680 kb on + strand, within ECD_02378at 2471.793 kb on + strand, within ECD_02378at 2471.802 kb on + strand, within ECD_02378at 2471.870 kb on - strand, within ECD_02378at 2471.905 kb on + strand, within ECD_02378at 2471.905 kb on + strand, within ECD_02378at 2471.913 kb on + strand, within ECD_02378at 2471.914 kb on - strand, within ECD_02378at 2472.053 kb on + strand, within ECD_02378at 2472.053 kb on + strand, within ECD_02378at 2472.220 kb on + strand, within ECD_02378at 2472.220 kb on + strand, within ECD_02378at 2472.221 kb on - strand, within ECD_02378at 2472.229 kb on - strand, within ECD_02378at 2472.229 kb on - strand, within ECD_02378at 2472.320 kb on + strand, within ECD_02378at 2472.333 kb on + strand, within ECD_02378at 2472.389 kb on + strand, within ECD_02378at 2472.390 kb on - strand, within ECD_02378

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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2,469,794 + ECD_02376 0.30 +0.8
2,469,807 + ECD_02376 0.31 +1.4
2,469,808 - ECD_02376 0.31 +0.2
2,469,835 + ECD_02376 0.33 +3.8
2,469,969 - ECD_02376 0.43 +1.5
2,470,060 + ECD_02376 0.50 -0.1
2,470,165 + ECD_02376 0.58 +0.4
2,470,165 + ECD_02376 0.58 -0.1
2,470,166 - ECD_02376 0.58 -0.0
2,470,166 - ECD_02376 0.58 -0.3
2,470,334 + ECD_02376 0.70 +0.1
2,470,352 - ECD_02376 0.72 -0.2
2,470,392 - ECD_02376 0.75 -0.5
2,470,713 - -0.3
2,470,733 - +1.0
2,470,735 + -0.1
2,470,735 + +1.1
2,470,760 + -0.1
2,470,761 - +1.7
2,471,144 - ECD_02377 0.61 +0.5
2,471,284 + ECD_02377 0.82 +1.0
2,471,284 + ECD_02377 0.82 -0.1
2,471,352 - -0.7
2,471,513 + +0.7
2,471,514 - -1.7
2,471,516 + +0.6
2,471,520 + +0.7
2,471,520 + -1.6
2,471,520 + -0.1
2,471,520 + -0.1
2,471,520 + -0.1
2,471,521 - +0.0
2,471,521 - -0.3
2,471,521 - -0.9
2,471,680 + ECD_02378 0.17 -0.9
2,471,793 + ECD_02378 0.25 -0.7
2,471,802 + ECD_02378 0.25 -0.8
2,471,870 - ECD_02378 0.29 -1.8
2,471,905 + ECD_02378 0.32 -0.0
2,471,905 + ECD_02378 0.32 -0.4
2,471,913 + ECD_02378 0.32 -0.8
2,471,914 - ECD_02378 0.32 +0.5
2,472,053 + ECD_02378 0.41 +0.2
2,472,053 + ECD_02378 0.41 +1.5
2,472,220 + ECD_02378 0.52 +0.9
2,472,220 + ECD_02378 0.52 -1.1
2,472,221 - ECD_02378 0.52 +0.9
2,472,229 - ECD_02378 0.52 +1.2
2,472,229 - ECD_02378 0.52 -1.3
2,472,320 + ECD_02378 0.58 +0.3
2,472,333 + ECD_02378 0.59 -0.9
2,472,389 + ECD_02378 0.62 +1.2
2,472,390 - ECD_02378 0.62 +0.2

Or see this region's nucleotide sequence