Strain Fitness in Escherichia coli BL21 around ECD_02376

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02376 and ECD_02377 are separated by 14 nucleotidesECD_02377 and ECD_02378 are separated by 4 nucleotides ECD_02376: ECD_02376 - hydrogenase 4, membrane subunit, at 2,469,385 to 2,470,734 _02376 ECD_02377: ECD_02377 - hydrogenase 4, membrane subunit, at 2,470,749 to 2,471,399 _02377 ECD_02378: ECD_02378 - hydrogenase 4, membrane subunit, at 2,471,404 to 2,472,984 _02378 Position (kb) 2469 2470 2471Strain fitness (log2 ratio) -1 0 1 2 3 4at 2468.426 kb on - strandat 2468.439 kb on + strandat 2468.440 kb on - strandat 2468.440 kb on - strandat 2468.450 kb on - strandat 2468.530 kb on + strandat 2468.531 kb on - strandat 2468.531 kb on - strandat 2468.533 kb on - strandat 2468.571 kb on + strandat 2468.611 kb on - strandat 2468.614 kb on + strandat 2468.615 kb on - strandat 2468.663 kb on - strandat 2468.845 kb on - strandat 2469.299 kb on - strandat 2469.580 kb on + strand, within ECD_02376at 2469.794 kb on + strand, within ECD_02376at 2469.807 kb on + strand, within ECD_02376at 2469.808 kb on - strand, within ECD_02376at 2469.835 kb on + strand, within ECD_02376at 2469.969 kb on - strand, within ECD_02376at 2470.060 kb on + strand, within ECD_02376at 2470.165 kb on + strand, within ECD_02376at 2470.165 kb on + strand, within ECD_02376at 2470.166 kb on - strand, within ECD_02376at 2470.166 kb on - strand, within ECD_02376at 2470.334 kb on + strand, within ECD_02376at 2470.352 kb on - strand, within ECD_02376at 2470.392 kb on - strand, within ECD_02376at 2470.713 kb on - strandat 2470.733 kb on - strandat 2470.735 kb on + strandat 2470.735 kb on + strandat 2470.760 kb on + strandat 2470.761 kb on - strandat 2471.144 kb on - strand, within ECD_02377at 2471.284 kb on + strand, within ECD_02377at 2471.284 kb on + strand, within ECD_02377at 2471.352 kb on - strandat 2471.513 kb on + strandat 2471.514 kb on - strandat 2471.516 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.520 kb on + strandat 2471.521 kb on - strandat 2471.521 kb on - strandat 2471.521 kb on - strandat 2471.680 kb on + strand, within ECD_02378

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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2,468,426 - +3.3
2,468,439 + -1.2
2,468,440 - -0.1
2,468,440 - -0.3
2,468,450 - -0.9
2,468,530 + -0.3
2,468,531 - -0.1
2,468,531 - +0.0
2,468,533 - -0.6
2,468,571 + +0.9
2,468,611 - -0.3
2,468,614 + +0.1
2,468,615 - +0.7
2,468,663 - +0.5
2,468,845 - +0.4
2,469,299 - -0.6
2,469,580 + ECD_02376 0.14 -0.3
2,469,794 + ECD_02376 0.30 +0.8
2,469,807 + ECD_02376 0.31 +1.4
2,469,808 - ECD_02376 0.31 +0.2
2,469,835 + ECD_02376 0.33 +3.8
2,469,969 - ECD_02376 0.43 +1.5
2,470,060 + ECD_02376 0.50 -0.1
2,470,165 + ECD_02376 0.58 +0.4
2,470,165 + ECD_02376 0.58 -0.1
2,470,166 - ECD_02376 0.58 -0.0
2,470,166 - ECD_02376 0.58 -0.3
2,470,334 + ECD_02376 0.70 +0.1
2,470,352 - ECD_02376 0.72 -0.2
2,470,392 - ECD_02376 0.75 -0.5
2,470,713 - -0.3
2,470,733 - +1.0
2,470,735 + -0.1
2,470,735 + +1.1
2,470,760 + -0.1
2,470,761 - +1.7
2,471,144 - ECD_02377 0.61 +0.5
2,471,284 + ECD_02377 0.82 +1.0
2,471,284 + ECD_02377 0.82 -0.1
2,471,352 - -0.7
2,471,513 + +0.7
2,471,514 - -1.7
2,471,516 + +0.6
2,471,520 + +0.7
2,471,520 + -1.6
2,471,520 + -0.1
2,471,520 + -0.1
2,471,520 + -0.1
2,471,521 - +0.0
2,471,521 - -0.3
2,471,521 - -0.9
2,471,680 + ECD_02378 0.17 -0.9

Or see this region's nucleotide sequence