Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02175 and ECD_02176 are separated by 99 nucleotides ECD_02176 and ECD_02177 are separated by 278 nucleotides ECD_02177 and ECD_02178 are separated by 38 nucleotides
ECD_02175: ECD_02175 - inactive PncC family protein, at 2,252,605 to 2,253,807
_02175
ECD_02176: ECD_02176 - outer membrane protein, putative porin, at 2,253,907 to 2,254,449
_02176
ECD_02177: ECD_02177 - nucleoside triphosphatase, at 2,254,728 to 2,255,153
_02177
ECD_02178: ECD_02178 - putative LPS core heptose(II)-phosphate phosphatase, at 2,255,192 to 2,255,794
_02178
Position (kb)
2253
2254
2255 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2253.205 kb on + strand, within ECD_02175 at 2253.206 kb on - strand, within ECD_02175 at 2253.381 kb on + strand, within ECD_02175 at 2253.767 kb on - strand at 2253.855 kb on + strand at 2253.865 kb on + strand at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.098 kb on - strand, within ECD_02176 at 2254.101 kb on - strand, within ECD_02176 at 2254.181 kb on + strand, within ECD_02176 at 2254.356 kb on - strand, within ECD_02176 at 2254.502 kb on - strand at 2254.552 kb on - strand at 2254.747 kb on + strand at 2254.776 kb on + strand, within ECD_02177 at 2255.068 kb on - strand, within ECD_02177 at 2255.273 kb on - strand, within ECD_02178 at 2255.303 kb on - strand, within ECD_02178 at 2255.303 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178 at 2255.305 kb on - strand, within ECD_02178
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 2,253,205 + ECD_02175 0.50 -0.6 2,253,206 - ECD_02175 0.50 -1.9 2,253,381 + ECD_02175 0.65 +0.1 2,253,767 - -0.2 2,253,855 + -0.4 2,253,865 + -0.0 2,254,098 - ECD_02176 0.35 +0.1 2,254,098 - ECD_02176 0.35 +1.6 2,254,098 - ECD_02176 0.35 -0.9 2,254,098 - ECD_02176 0.35 +1.3 2,254,098 - ECD_02176 0.35 +1.4 2,254,098 - ECD_02176 0.35 +3.2 2,254,101 - ECD_02176 0.36 -0.6 2,254,181 + ECD_02176 0.50 +0.1 2,254,356 - ECD_02176 0.83 -0.2 2,254,502 - -0.4 2,254,552 - +0.1 2,254,747 + -0.0 2,254,776 + ECD_02177 0.11 -1.1 2,255,068 - ECD_02177 0.80 +1.8 2,255,273 - ECD_02178 0.13 -1.0 2,255,303 - ECD_02178 0.18 +0.0 2,255,303 - ECD_02178 0.18 -0.9 2,255,305 - ECD_02178 0.19 +0.2 2,255,305 - ECD_02178 0.19 -0.1 2,255,305 - ECD_02178 0.19 +0.2 2,255,305 - ECD_02178 0.19 +1.6 2,255,305 - ECD_02178 0.19 -1.8
Or see this region's nucleotide sequence