Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01800 and ECD_01801 are separated by 191 nucleotides ECD_01801 and ECD_01802 are separated by 19 nucleotides ECD_01802 and ECD_01803 are separated by 96 nucleotides
ECD_01800: ECD_01800 - putative endopeptidase, at 1,857,420 to 1,858,301
_01800
ECD_01801: ECD_01801 - carboxy-terminal protease for penicillin-binding protein 3, at 1,858,493 to 1,860,541
_01801
ECD_01802: ECD_01802 - RNA chaperone, putative ProP translation regulator, at 1,860,561 to 1,861,259
_01802
ECD_01803: ECD_01803 - free methionine-(R)-sulfoxide reductase, at 1,861,356 to 1,861,907
_01803
Position (kb)
1858
1859
1860
1861 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1857.510 kb on - strand, within ECD_01800 at 1857.719 kb on - strand, within ECD_01800 at 1858.007 kb on - strand, within ECD_01800 at 1858.062 kb on - strand, within ECD_01800 at 1858.126 kb on - strand, within ECD_01800 at 1858.222 kb on - strand at 1858.495 kb on - strand at 1858.717 kb on - strand, within ECD_01801 at 1858.979 kb on - strand, within ECD_01801 at 1858.979 kb on - strand, within ECD_01801 at 1859.026 kb on - strand, within ECD_01801 at 1859.061 kb on - strand, within ECD_01801 at 1859.061 kb on - strand, within ECD_01801 at 1859.073 kb on + strand, within ECD_01801 at 1859.077 kb on + strand, within ECD_01801 at 1859.078 kb on - strand, within ECD_01801 at 1859.078 kb on - strand, within ECD_01801 at 1859.078 kb on - strand, within ECD_01801 at 1859.228 kb on - strand, within ECD_01801 at 1859.230 kb on - strand, within ECD_01801 at 1859.230 kb on - strand, within ECD_01801 at 1859.230 kb on - strand, within ECD_01801 at 1859.312 kb on - strand, within ECD_01801 at 1859.446 kb on - strand, within ECD_01801 at 1859.446 kb on - strand, within ECD_01801 at 1859.530 kb on + strand, within ECD_01801 at 1859.531 kb on - strand, within ECD_01801 at 1859.550 kb on - strand, within ECD_01801 at 1859.583 kb on - strand, within ECD_01801 at 1859.621 kb on - strand, within ECD_01801 at 1859.625 kb on - strand, within ECD_01801 at 1859.723 kb on - strand, within ECD_01801 at 1859.867 kb on - strand, within ECD_01801 at 1860.038 kb on - strand, within ECD_01801 at 1860.104 kb on - strand, within ECD_01801 at 1860.104 kb on - strand, within ECD_01801 at 1860.104 kb on - strand, within ECD_01801 at 1860.105 kb on + strand, within ECD_01801 at 1860.105 kb on + strand, within ECD_01801 at 1860.106 kb on - strand, within ECD_01801 at 1860.106 kb on - strand, within ECD_01801 at 1860.157 kb on - strand, within ECD_01801 at 1860.205 kb on - strand, within ECD_01801 at 1860.467 kb on - strand at 1860.474 kb on - strand at 1860.642 kb on + strand, within ECD_01802 at 1860.646 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1861.070 kb on - strand, within ECD_01802 at 1861.090 kb on - strand, within ECD_01802 at 1861.245 kb on - strand at 1861.245 kb on - strand at 1861.245 kb on - strand at 1861.273 kb on + strand at 1861.284 kb on + strand at 1861.284 kb on + strand at 1861.318 kb on - strand at 1861.318 kb on - strand at 1861.318 kb on - strand at 1861.319 kb on + strand at 1861.320 kb on - strand at 1861.320 kb on - strand at 1861.320 kb on - strand at 1861.341 kb on + strand at 1861.342 kb on - strand at 1861.435 kb on - strand, within ECD_01803 at 1861.435 kb on - strand, within ECD_01803 at 1861.435 kb on - strand, within ECD_01803 at 1861.476 kb on - strand, within ECD_01803
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 1,857,510 - ECD_01800 0.10 +1.2 1,857,719 - ECD_01800 0.34 -1.2 1,858,007 - ECD_01800 0.67 +0.6 1,858,062 - ECD_01800 0.73 +1.1 1,858,126 - ECD_01800 0.80 +0.8 1,858,222 - -1.0 1,858,495 - +1.1 1,858,717 - ECD_01801 0.11 +1.3 1,858,979 - ECD_01801 0.24 +0.9 1,858,979 - ECD_01801 0.24 +3.3 1,859,026 - ECD_01801 0.26 +1.9 1,859,061 - ECD_01801 0.28 +2.8 1,859,061 - ECD_01801 0.28 +1.6 1,859,073 + ECD_01801 0.28 +1.9 1,859,077 + ECD_01801 0.29 +2.7 1,859,078 - ECD_01801 0.29 +1.8 1,859,078 - ECD_01801 0.29 +1.5 1,859,078 - ECD_01801 0.29 +2.2 1,859,228 - ECD_01801 0.36 +1.9 1,859,230 - ECD_01801 0.36 +1.0 1,859,230 - ECD_01801 0.36 +1.9 1,859,230 - ECD_01801 0.36 +2.3 1,859,312 - ECD_01801 0.40 +1.9 1,859,446 - ECD_01801 0.47 +1.5 1,859,446 - ECD_01801 0.47 +2.6 1,859,530 + ECD_01801 0.51 +2.1 1,859,531 - ECD_01801 0.51 +1.9 1,859,550 - ECD_01801 0.52 +1.5 1,859,583 - ECD_01801 0.53 +2.1 1,859,621 - ECD_01801 0.55 +2.6 1,859,625 - ECD_01801 0.55 +1.7 1,859,723 - ECD_01801 0.60 +2.2 1,859,867 - ECD_01801 0.67 +3.5 1,860,038 - ECD_01801 0.75 +1.9 1,860,104 - ECD_01801 0.79 +2.6 1,860,104 - ECD_01801 0.79 +3.4 1,860,104 - ECD_01801 0.79 +1.3 1,860,105 + ECD_01801 0.79 +0.1 1,860,105 + ECD_01801 0.79 +2.1 1,860,106 - ECD_01801 0.79 +2.9 1,860,106 - ECD_01801 0.79 +0.5 1,860,157 - ECD_01801 0.81 +2.0 1,860,205 - ECD_01801 0.84 +1.9 1,860,467 - +2.3 1,860,474 - +2.2 1,860,642 + ECD_01802 0.12 -0.3 1,860,646 - ECD_01802 0.12 -0.4 1,860,973 - ECD_01802 0.59 -0.6 1,860,973 - ECD_01802 0.59 -0.3 1,860,973 - ECD_01802 0.59 -1.2 1,860,973 - ECD_01802 0.59 -2.1 1,860,973 - ECD_01802 0.59 -1.0 1,860,973 - ECD_01802 0.59 -0.5 1,860,973 - ECD_01802 0.59 +0.5 1,861,070 - ECD_01802 0.73 -0.9 1,861,090 - ECD_01802 0.76 +3.5 1,861,245 - -0.8 1,861,245 - -0.9 1,861,245 - -0.5 1,861,273 + -1.5 1,861,284 + +0.5 1,861,284 + -0.5 1,861,318 - -0.7 1,861,318 - -1.4 1,861,318 - -0.2 1,861,319 + -0.5 1,861,320 - -0.4 1,861,320 - -0.9 1,861,320 - -0.4 1,861,341 + -1.9 1,861,342 - +0.5 1,861,435 - ECD_01803 0.14 -0.6 1,861,435 - ECD_01803 0.14 -0.8 1,861,435 - ECD_01803 0.14 -0.2 1,861,476 - ECD_01803 0.22 +0.1
Or see this region's nucleotide sequence