Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01630 and ECD_01631 are separated by 112 nucleotides ECD_01631 and ECD_01632 are separated by 290 nucleotides
ECD_01630: ECD_01630 - LysR family putative transcriptional regulator, at 1,684,135 to 1,685,067
_01630
ECD_01631: ECD_01631 - putative arabinose efflux transporter, at 1,685,180 to 1,686,391
_01631
ECD_01632: ECD_01632 - cyclopropane fatty acyl phospholipid synthase, SAM-dependent, at 1,686,682 to 1,687,830
_01632
Position (kb)
1685
1686
1687 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1684.504 kb on - strand, within ECD_01630 at 1684.504 kb on - strand, within ECD_01630 at 1684.750 kb on - strand, within ECD_01630 at 1685.177 kb on + strand at 1685.177 kb on + strand at 1685.177 kb on + strand at 1685.177 kb on + strand at 1685.177 kb on + strand at 1685.252 kb on + strand at 1685.904 kb on + strand, within ECD_01631 at 1685.909 kb on + strand, within ECD_01631 at 1686.119 kb on + strand, within ECD_01631 at 1686.492 kb on + strand at 1686.587 kb on + strand at 1686.865 kb on + strand, within ECD_01632 at 1687.231 kb on + strand, within ECD_01632 at 1687.231 kb on + strand, within ECD_01632 at 1687.231 kb on + strand, within ECD_01632
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 1,684,504 - ECD_01630 0.40 +1.1 1,684,504 - ECD_01630 0.40 +1.6 1,684,750 - ECD_01630 0.66 +1.3 1,685,177 + +1.4 1,685,177 + +1.8 1,685,177 + +1.5 1,685,177 + +1.4 1,685,177 + +2.6 1,685,252 + +2.1 1,685,904 + ECD_01631 0.60 +2.0 1,685,909 + ECD_01631 0.60 +2.2 1,686,119 + ECD_01631 0.77 +2.8 1,686,492 + +0.2 1,686,587 + +0.7 1,686,865 + ECD_01632 0.16 +0.7 1,687,231 + ECD_01632 0.48 -0.1 1,687,231 + ECD_01632 0.48 -0.9 1,687,231 + ECD_01632 0.48 -2.0
Or see this region's nucleotide sequence