Strain Fitness in Escherichia coli BL21 around ECD_01628

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01627 and ECD_01628 are separated by 165 nucleotidesECD_01628 and ECD_01629 are separated by 268 nucleotides ECD_01627: ECD_01627 - putative MFS transporter, inner membrane protein, at 1,681,390 to 1,682,559 _01627 ECD_01628: ECD_01628 - putative transporter, at 1,682,725 to 1,682,844 _01628 ECD_01629: ECD_01629 - transcriptional repressor, hypoxanthine-binding, at 1,683,113 to 1,684,138 _01629 Position (kb) 1682 1683Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1681.891 kb on - strand, within ECD_01627at 1681.893 kb on - strand, within ECD_01627at 1681.893 kb on - strand, within ECD_01627at 1682.017 kb on - strand, within ECD_01627at 1682.283 kb on - strand, within ECD_01627at 1682.958 kb on + strandat 1682.963 kb on + strandat 1683.132 kb on + strandat 1683.132 kb on + strandat 1683.132 kb on + strandat 1683.157 kb on + strandat 1683.712 kb on + strand, within ECD_01629at 1683.712 kb on + strand, within ECD_01629

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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1,681,891 - ECD_01627 0.43 -0.3
1,681,893 - ECD_01627 0.43 +1.2
1,681,893 - ECD_01627 0.43 +0.5
1,682,017 - ECD_01627 0.54 +1.7
1,682,283 - ECD_01627 0.76 +0.4
1,682,958 + -1.1
1,682,963 + -4.0
1,683,132 + -1.5
1,683,132 + -3.6
1,683,132 + -0.5
1,683,157 + -1.5
1,683,712 + ECD_01629 0.58 -2.3
1,683,712 + ECD_01629 0.58 -3.0

Or see this region's nucleotide sequence