Strain Fitness in Escherichia coli BL21 around ECD_01573

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01572 and ECD_01573 are separated by 523 nucleotidesECD_01573 and ECD_01574 are separated by 185 nucleotides ECD_01572: ECD_01572 - pyridine nucleotide transhydrogenase, alpha subunit, at 1,621,568 to 1,623,100 _01572 ECD_01573: ECD_01573 - DUF1471 family periplasmic protein, at 1,623,624 to 1,624,568 _01573 ECD_01574: ECD_01574 - putative arginine/ornithine antiporter transporter, at 1,624,754 to 1,626,136 _01574 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -1 0 1 2 3at 1622.799 kb on - strand, within ECD_01572at 1622.918 kb on - strand, within ECD_01572at 1623.087 kb on - strandat 1623.123 kb on - strandat 1623.591 kb on + strandat 1623.742 kb on + strand, within ECD_01573at 1623.742 kb on + strand, within ECD_01573at 1623.761 kb on + strand, within ECD_01573at 1624.140 kb on + strand, within ECD_01573at 1624.434 kb on + strand, within ECD_01573at 1624.497 kb on + strandat 1624.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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1,622,799 - ECD_01572 0.80 -0.7
1,622,918 - ECD_01572 0.88 +1.7
1,623,087 - +0.5
1,623,123 - -0.2
1,623,591 + +2.8
1,623,742 + ECD_01573 0.12 +1.1
1,623,742 + ECD_01573 0.12 +1.1
1,623,761 + ECD_01573 0.14 +0.4
1,624,140 + ECD_01573 0.55 +0.6
1,624,434 + ECD_01573 0.86 +1.4
1,624,497 + +2.2
1,624,532 + +0.9

Or see this region's nucleotide sequence