Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01406 and ECD_01407 are separated by 197 nucleotides ECD_01407 and ECD_01408 are separated by 35 nucleotides ECD_01408 and ECD_01409 are separated by 241 nucleotides
ECD_01406: ECD_01406 - curcumin/dihydrocurcumin reductase, NADPH-dependent, at 1,473,090 to 1,474,127
_01406
ECD_01407: ECD_01407 - colanic acid and biofilm gene transcriptional regulator, MqsR-controlled, at 1,474,325 to 1,474,990
_01407
ECD_01408: ECD_01408 - putative iron outer membrane transporter, at 1,475,026 to 1,477,128
_01408
ECD_01409: ECD_01409 - ATP-binding protein, periplasmic, function unknown, at 1,477,370 to 1,478,431
_01409
Position (kb)
1475
1476
1477
1478 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1475.277 kb on - strand, within ECD_01408 at 1475.319 kb on - strand, within ECD_01408 at 1475.651 kb on - strand, within ECD_01408 at 1475.927 kb on - strand, within ECD_01408 at 1476.231 kb on - strand, within ECD_01408 at 1476.247 kb on - strand, within ECD_01408 at 1476.247 kb on - strand, within ECD_01408 at 1476.537 kb on - strand, within ECD_01408 at 1476.885 kb on - strand, within ECD_01408 at 1477.377 kb on + strand at 1477.378 kb on - strand at 1477.513 kb on + strand, within ECD_01409
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 1,475,277 - ECD_01408 0.12 -0.5 1,475,319 - ECD_01408 0.14 -0.2 1,475,651 - ECD_01408 0.30 -0.5 1,475,927 - ECD_01408 0.43 -0.4 1,476,231 - ECD_01408 0.57 +0.9 1,476,247 - ECD_01408 0.58 +0.1 1,476,247 - ECD_01408 0.58 -1.0 1,476,537 - ECD_01408 0.72 +0.2 1,476,885 - ECD_01408 0.88 -0.7 1,477,377 + -0.3 1,477,378 - +2.9 1,477,513 + ECD_01409 0.13 +2.4
Or see this region's nucleotide sequence