Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00630 and ECD_t00008 are separated by 153 nucleotides ECD_t00008 and ECD_t00009 are separated by 37 nucleotides ECD_t00009 and ECD_t00010 are separated by 47 nucleotides ECD_t00010 and ECD_t00011 are separated by 15 nucleotides ECD_t00011 and ECD_t00012 are separated by 34 nucleotides ECD_t00012 and ECD_t00013 are separated by 23 nucleotides ECD_t00013 and ECD_t00014 are separated by 8 nucleotides
ECD_00630: ECD_00630 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase, at 654,975 to 656,150
_00630
ECD_t00008: ECD_t00008 - tRNA-Gln, at 656,304 to 656,378
_t00008
ECD_t00009: ECD_t00009 - tRNA-Gln, at 656,416 to 656,490
_t00009
ECD_t00010: ECD_t00010 - tRNA-Met, at 656,538 to 656,614
_t00010
ECD_t00011: ECD_t00011 - tRNA-Gln, at 656,630 to 656,704
_t00011
ECD_t00012: ECD_t00012 - tRNA-Gln, at 656,739 to 656,813
_t00012
ECD_t00013: ECD_t00013 - tRNA-Leu, at 656,837 to 656,921
_t00013
ECD_t00014: ECD_t00014 - tRNA-Met, at 656,930 to 657,006
_t00014
Position (kb)
656
657 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 656.133 kb on + strand at 656.148 kb on + strand at 656.154 kb on + strand at 656.154 kb on + strand at 656.314 kb on - strand, within ECD_t00008 at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.392 kb on - strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.578 kb on - strand, within ECD_t00010 at 656.640 kb on - strand, within ECD_t00011 at 657.142 kb on - strand at 657.153 kb on - strand at 657.160 kb on - strand at 657.160 kb on - strand at 657.182 kb on + strand at 657.182 kb on + strand at 657.182 kb on + strand at 657.183 kb on - strand at 657.201 kb on + strand at 657.228 kb on + strand at 657.228 kb on + strand at 657.247 kb on + strand at 657.262 kb on + strand at 657.262 kb on + strand at 657.262 kb on + strand at 657.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 656,133 + +0.5 656,148 + -0.6 656,154 + -2.9 656,154 + +0.9 656,314 - ECD_t00008 0.13 -0.8 656,392 - +0.0 656,392 - -0.0 656,392 - +0.4 656,392 - -0.1 656,392 - +0.1 656,392 - -0.5 656,399 - -1.3 656,399 - +0.1 656,578 - ECD_t00010 0.52 -1.1 656,640 - ECD_t00011 0.13 -0.3 657,142 - +0.5 657,153 - -0.8 657,160 - -1.0 657,160 - -0.5 657,182 + +0.5 657,182 + +0.3 657,182 + -0.3 657,183 - -0.3 657,201 + +0.0 657,228 + -1.0 657,228 + +0.3 657,247 + -0.1 657,262 + -0.2 657,262 + +0.8 657,262 + +0.1 657,344 - +1.1
Or see this region's nucleotide sequence