Strain Fitness in Escherichia coli BL21 around ECD_04033

Experiment: Bas51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04032 and ECD_t00080 are separated by 210 nucleotidesECD_t00080 and ECD_t00081 are separated by 36 nucleotidesECD_t00081 and ECD_t00082 are separated by 35 nucleotidesECD_t00082 and ECD_04033 are separated by 269 nucleotidesECD_04033 and ECD_04034 overlap by 2 nucleotides ECD_04032: ECD_04032 - oligoribonuclease, at 4,298,124 to 4,298,669 _04032 ECD_t00080: ECD_t00080 - tRNA-Gly, at 4,298,880 to 4,298,955 _t00080 ECD_t00081: ECD_t00081 - tRNA-Gly, at 4,298,992 to 4,299,067 _t00081 ECD_t00082: ECD_t00082 - tRNA-Gly, at 4,299,103 to 4,299,178 _t00082 ECD_04033: ECD_04033 - epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis, at 4,299,448 to 4,300,587 _04033 ECD_04034: ECD_04034 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase, at 4,300,586 to 4,302,133 _04034 Position (kb) 4299 4300 4301Strain fitness (log2 ratio) -2 -1 0 1 2at 4298.687 kb on + strandat 4298.688 kb on - strandat 4298.874 kb on + strandat 4298.874 kb on + strandat 4298.877 kb on + strandat 4299.521 kb on - strandat 4299.541 kb on + strandat 4299.565 kb on + strand, within ECD_04033at 4299.566 kb on - strand, within ECD_04033at 4299.663 kb on + strand, within ECD_04033at 4299.663 kb on + strand, within ECD_04033at 4299.815 kb on + strand, within ECD_04033at 4299.834 kb on + strand, within ECD_04033at 4299.923 kb on + strand, within ECD_04033at 4299.930 kb on + strand, within ECD_04033at 4299.930 kb on + strand, within ECD_04033at 4299.931 kb on - strand, within ECD_04033at 4299.931 kb on - strand, within ECD_04033at 4299.951 kb on + strand, within ECD_04033at 4299.952 kb on - strand, within ECD_04033at 4299.952 kb on - strand, within ECD_04033at 4299.952 kb on - strand, within ECD_04033at 4299.953 kb on + strand, within ECD_04033at 4299.953 kb on + strand, within ECD_04033at 4299.985 kb on - strand, within ECD_04033at 4299.990 kb on + strand, within ECD_04033at 4300.101 kb on + strand, within ECD_04033at 4300.101 kb on + strand, within ECD_04033at 4300.113 kb on + strand, within ECD_04033at 4300.113 kb on + strand, within ECD_04033at 4300.113 kb on + strand, within ECD_04033at 4300.113 kb on + strand, within ECD_04033at 4300.114 kb on - strand, within ECD_04033at 4300.114 kb on - strand, within ECD_04033at 4300.114 kb on - strand, within ECD_04033at 4300.114 kb on - strand, within ECD_04033at 4300.114 kb on - strand, within ECD_04033at 4300.144 kb on + strand, within ECD_04033at 4300.343 kb on + strand, within ECD_04033at 4300.343 kb on + strand, within ECD_04033at 4300.343 kb on + strand, within ECD_04033at 4300.344 kb on - strand, within ECD_04033at 4300.384 kb on + strand, within ECD_04033at 4300.445 kb on + strand, within ECD_04033at 4300.445 kb on + strand, within ECD_04033at 4300.506 kb on + strandat 4300.507 kb on - strandat 4300.510 kb on + strandat 4300.558 kb on + strandat 4300.597 kb on + strandat 4300.597 kb on + strandat 4300.597 kb on + strandat 4300.598 kb on - strandat 4300.598 kb on - strandat 4300.598 kb on - strandat 4300.618 kb on - strandat 4300.621 kb on + strandat 4300.621 kb on + strandat 4300.621 kb on + strandat 4300.621 kb on + strandat 4300.621 kb on + strandat 4300.621 kb on + strandat 4300.700 kb on + strandat 4300.700 kb on + strandat 4300.754 kb on + strand, within ECD_04034at 4300.795 kb on + strand, within ECD_04034at 4300.795 kb on + strand, within ECD_04034at 4300.796 kb on - strand, within ECD_04034at 4300.796 kb on - strand, within ECD_04034at 4300.814 kb on + strand, within ECD_04034at 4300.814 kb on + strand, within ECD_04034at 4300.814 kb on + strand, within ECD_04034at 4300.814 kb on + strand, within ECD_04034at 4300.815 kb on - strand, within ECD_04034at 4300.815 kb on - strand, within ECD_04034at 4300.923 kb on + strand, within ECD_04034at 4301.246 kb on - strand, within ECD_04034at 4301.398 kb on + strand, within ECD_04034at 4301.399 kb on - strand, within ECD_04034

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
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4,298,687 + +0.4
4,298,688 - -0.7
4,298,874 + +0.8
4,298,874 + -0.1
4,298,877 + +0.3
4,299,521 - +0.3
4,299,541 + -0.8
4,299,565 + ECD_04033 0.10 -0.2
4,299,566 - ECD_04033 0.10 +0.8
4,299,663 + ECD_04033 0.19 +0.4
4,299,663 + ECD_04033 0.19 -1.2
4,299,815 + ECD_04033 0.32 +1.2
4,299,834 + ECD_04033 0.34 +0.8
4,299,923 + ECD_04033 0.42 -0.6
4,299,930 + ECD_04033 0.42 -1.0
4,299,930 + ECD_04033 0.42 +0.5
4,299,931 - ECD_04033 0.42 -0.2
4,299,931 - ECD_04033 0.42 +0.4
4,299,951 + ECD_04033 0.44 +0.0
4,299,952 - ECD_04033 0.44 -0.2
4,299,952 - ECD_04033 0.44 +0.4
4,299,952 - ECD_04033 0.44 -0.8
4,299,953 + ECD_04033 0.44 -1.7
4,299,953 + ECD_04033 0.44 -0.3
4,299,985 - ECD_04033 0.47 -0.6
4,299,990 + ECD_04033 0.48 -0.5
4,300,101 + ECD_04033 0.57 +0.0
4,300,101 + ECD_04033 0.57 +0.3
4,300,113 + ECD_04033 0.58 +0.6
4,300,113 + ECD_04033 0.58 -0.3
4,300,113 + ECD_04033 0.58 -0.4
4,300,113 + ECD_04033 0.58 +0.4
4,300,114 - ECD_04033 0.58 +0.2
4,300,114 - ECD_04033 0.58 -2.7
4,300,114 - ECD_04033 0.58 +1.1
4,300,114 - ECD_04033 0.58 -0.7
4,300,114 - ECD_04033 0.58 +0.7
4,300,144 + ECD_04033 0.61 +0.2
4,300,343 + ECD_04033 0.79 -0.3
4,300,343 + ECD_04033 0.79 -0.2
4,300,343 + ECD_04033 0.79 -0.7
4,300,344 - ECD_04033 0.79 +0.1
4,300,384 + ECD_04033 0.82 -0.7
4,300,445 + ECD_04033 0.87 +0.1
4,300,445 + ECD_04033 0.87 +0.4
4,300,506 + -0.7
4,300,507 - -0.5
4,300,510 + +0.5
4,300,558 + -0.8
4,300,597 + -1.2
4,300,597 + +2.0
4,300,597 + +0.1
4,300,598 - -0.1
4,300,598 - -0.9
4,300,598 - +0.3
4,300,618 - -1.4
4,300,621 + +1.6
4,300,621 + +0.5
4,300,621 + -0.9
4,300,621 + -0.6
4,300,621 + +1.4
4,300,621 + +0.4
4,300,700 + -0.5
4,300,700 + -1.0
4,300,754 + ECD_04034 0.11 +0.1
4,300,795 + ECD_04034 0.14 -0.7
4,300,795 + ECD_04034 0.14 +1.5
4,300,796 - ECD_04034 0.14 -0.8
4,300,796 - ECD_04034 0.14 -0.3
4,300,814 + ECD_04034 0.15 -0.1
4,300,814 + ECD_04034 0.15 -0.1
4,300,814 + ECD_04034 0.15 +0.5
4,300,814 + ECD_04034 0.15 +2.1
4,300,815 - ECD_04034 0.15 -0.0
4,300,815 - ECD_04034 0.15 -0.3
4,300,923 + ECD_04034 0.22 -2.0
4,301,246 - ECD_04034 0.43 -1.4
4,301,398 + ECD_04034 0.52 +0.1
4,301,399 - ECD_04034 0.53 +1.4

Or see this region's nucleotide sequence