Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04032 and ECD_t00080 are separated by 210 nucleotides ECD_t00080 and ECD_t00081 are separated by 36 nucleotides ECD_t00081 and ECD_t00082 are separated by 35 nucleotides ECD_t00082 and ECD_04033 are separated by 269 nucleotides ECD_04033 and ECD_04034 overlap by 2 nucleotides
ECD_04032: ECD_04032 - oligoribonuclease, at 4,298,124 to 4,298,669
_04032
ECD_t00080: ECD_t00080 - tRNA-Gly, at 4,298,880 to 4,298,955
_t00080
ECD_t00081: ECD_t00081 - tRNA-Gly, at 4,298,992 to 4,299,067
_t00081
ECD_t00082: ECD_t00082 - tRNA-Gly, at 4,299,103 to 4,299,178
_t00082
ECD_04033: ECD_04033 - epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis, at 4,299,448 to 4,300,587
_04033
ECD_04034: ECD_04034 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase, at 4,300,586 to 4,302,133
_04034
Position (kb)
4299
4300
4301 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4298.687 kb on + strand at 4298.688 kb on - strand at 4298.874 kb on + strand at 4298.874 kb on + strand at 4298.877 kb on + strand at 4299.521 kb on - strand at 4299.541 kb on + strand at 4299.565 kb on + strand, within ECD_04033 at 4299.566 kb on - strand, within ECD_04033 at 4299.663 kb on + strand, within ECD_04033 at 4299.663 kb on + strand, within ECD_04033 at 4299.815 kb on + strand, within ECD_04033 at 4299.834 kb on + strand, within ECD_04033 at 4299.923 kb on + strand, within ECD_04033 at 4299.930 kb on + strand, within ECD_04033 at 4299.930 kb on + strand, within ECD_04033 at 4299.931 kb on - strand, within ECD_04033 at 4299.931 kb on - strand, within ECD_04033 at 4299.951 kb on + strand, within ECD_04033 at 4299.952 kb on - strand, within ECD_04033 at 4299.952 kb on - strand, within ECD_04033 at 4299.952 kb on - strand, within ECD_04033 at 4299.953 kb on + strand, within ECD_04033 at 4299.953 kb on + strand, within ECD_04033 at 4299.985 kb on - strand, within ECD_04033 at 4299.990 kb on + strand, within ECD_04033 at 4300.101 kb on + strand, within ECD_04033 at 4300.101 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.144 kb on + strand, within ECD_04033 at 4300.343 kb on + strand, within ECD_04033 at 4300.343 kb on + strand, within ECD_04033 at 4300.343 kb on + strand, within ECD_04033 at 4300.344 kb on - strand, within ECD_04033 at 4300.384 kb on + strand, within ECD_04033 at 4300.445 kb on + strand, within ECD_04033 at 4300.445 kb on + strand, within ECD_04033 at 4300.506 kb on + strand at 4300.507 kb on - strand at 4300.510 kb on + strand at 4300.558 kb on + strand at 4300.597 kb on + strand at 4300.597 kb on + strand at 4300.597 kb on + strand at 4300.598 kb on - strand at 4300.598 kb on - strand at 4300.598 kb on - strand at 4300.618 kb on - strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.700 kb on + strand at 4300.700 kb on + strand at 4300.754 kb on + strand, within ECD_04034 at 4300.795 kb on + strand, within ECD_04034 at 4300.795 kb on + strand, within ECD_04034 at 4300.796 kb on - strand, within ECD_04034 at 4300.796 kb on - strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.815 kb on - strand, within ECD_04034 at 4300.815 kb on - strand, within ECD_04034 at 4300.923 kb on + strand, within ECD_04034 at 4301.246 kb on - strand, within ECD_04034 at 4301.398 kb on + strand, within ECD_04034 at 4301.399 kb on - strand, within ECD_04034
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 4,298,687 + +0.4 4,298,688 - -0.7 4,298,874 + +0.8 4,298,874 + -0.1 4,298,877 + +0.3 4,299,521 - +0.3 4,299,541 + -0.8 4,299,565 + ECD_04033 0.10 -0.2 4,299,566 - ECD_04033 0.10 +0.8 4,299,663 + ECD_04033 0.19 +0.4 4,299,663 + ECD_04033 0.19 -1.2 4,299,815 + ECD_04033 0.32 +1.2 4,299,834 + ECD_04033 0.34 +0.8 4,299,923 + ECD_04033 0.42 -0.6 4,299,930 + ECD_04033 0.42 -1.0 4,299,930 + ECD_04033 0.42 +0.5 4,299,931 - ECD_04033 0.42 -0.2 4,299,931 - ECD_04033 0.42 +0.4 4,299,951 + ECD_04033 0.44 +0.0 4,299,952 - ECD_04033 0.44 -0.2 4,299,952 - ECD_04033 0.44 +0.4 4,299,952 - ECD_04033 0.44 -0.8 4,299,953 + ECD_04033 0.44 -1.7 4,299,953 + ECD_04033 0.44 -0.3 4,299,985 - ECD_04033 0.47 -0.6 4,299,990 + ECD_04033 0.48 -0.5 4,300,101 + ECD_04033 0.57 +0.0 4,300,101 + ECD_04033 0.57 +0.3 4,300,113 + ECD_04033 0.58 +0.6 4,300,113 + ECD_04033 0.58 -0.3 4,300,113 + ECD_04033 0.58 -0.4 4,300,113 + ECD_04033 0.58 +0.4 4,300,114 - ECD_04033 0.58 +0.2 4,300,114 - ECD_04033 0.58 -2.7 4,300,114 - ECD_04033 0.58 +1.1 4,300,114 - ECD_04033 0.58 -0.7 4,300,114 - ECD_04033 0.58 +0.7 4,300,144 + ECD_04033 0.61 +0.2 4,300,343 + ECD_04033 0.79 -0.3 4,300,343 + ECD_04033 0.79 -0.2 4,300,343 + ECD_04033 0.79 -0.7 4,300,344 - ECD_04033 0.79 +0.1 4,300,384 + ECD_04033 0.82 -0.7 4,300,445 + ECD_04033 0.87 +0.1 4,300,445 + ECD_04033 0.87 +0.4 4,300,506 + -0.7 4,300,507 - -0.5 4,300,510 + +0.5 4,300,558 + -0.8 4,300,597 + -1.2 4,300,597 + +2.0 4,300,597 + +0.1 4,300,598 - -0.1 4,300,598 - -0.9 4,300,598 - +0.3 4,300,618 - -1.4 4,300,621 + +1.6 4,300,621 + +0.5 4,300,621 + -0.9 4,300,621 + -0.6 4,300,621 + +1.4 4,300,621 + +0.4 4,300,700 + -0.5 4,300,700 + -1.0 4,300,754 + ECD_04034 0.11 +0.1 4,300,795 + ECD_04034 0.14 -0.7 4,300,795 + ECD_04034 0.14 +1.5 4,300,796 - ECD_04034 0.14 -0.8 4,300,796 - ECD_04034 0.14 -0.3 4,300,814 + ECD_04034 0.15 -0.1 4,300,814 + ECD_04034 0.15 -0.1 4,300,814 + ECD_04034 0.15 +0.5 4,300,814 + ECD_04034 0.15 +2.1 4,300,815 - ECD_04034 0.15 -0.0 4,300,815 - ECD_04034 0.15 -0.3 4,300,923 + ECD_04034 0.22 -2.0 4,301,246 - ECD_04034 0.43 -1.4 4,301,398 + ECD_04034 0.52 +0.1 4,301,399 - ECD_04034 0.53 +1.4
Or see this region's nucleotide sequence