Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03956 and ECD_03957 overlap by 17 nucleotides ECD_03957 and ECD_03958 are separated by 10 nucleotides ECD_03958 and ECD_03959 overlap by 22 nucleotides
ECD_03956: ECD_03956 - D-allose kinase, at 4,214,057 to 4,214,986
_03956
ECD_03957: ECD_03957 - allulose-6-phosphate 3-epimerase, at 4,214,970 to 4,215,665
_03957
ECD_03958: ECD_03958 - D-allose ABC transporter permease, at 4,215,676 to 4,216,656
_03958
ECD_03959: ECD_03959 - D-allose ABC transporter ATPase, at 4,216,635 to 4,218,167
_03959
Position (kb)
4215
4216
4217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4214.700 kb on + strand, within ECD_03956 at 4214.701 kb on - strand, within ECD_03956 at 4214.741 kb on - strand, within ECD_03956 at 4214.741 kb on - strand, within ECD_03956 at 4214.753 kb on - strand, within ECD_03956 at 4214.758 kb on + strand, within ECD_03956 at 4214.994 kb on + strand at 4215.291 kb on - strand, within ECD_03957 at 4215.292 kb on + strand, within ECD_03957 at 4215.292 kb on + strand, within ECD_03957 at 4215.292 kb on + strand, within ECD_03957 at 4215.293 kb on - strand, within ECD_03957 at 4215.293 kb on - strand, within ECD_03957 at 4215.295 kb on + strand, within ECD_03957 at 4215.295 kb on + strand, within ECD_03957 at 4215.295 kb on + strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.451 kb on + strand, within ECD_03957 at 4215.452 kb on - strand, within ECD_03957 at 4215.452 kb on - strand, within ECD_03957 at 4215.452 kb on - strand, within ECD_03957 at 4215.519 kb on + strand, within ECD_03957 at 4215.519 kb on + strand, within ECD_03957 at 4215.520 kb on - strand, within ECD_03957 at 4215.584 kb on - strand, within ECD_03957 at 4215.603 kb on - strand at 4215.681 kb on + strand at 4215.681 kb on + strand at 4215.681 kb on + strand at 4215.682 kb on - strand at 4215.682 kb on - strand at 4215.718 kb on + strand at 4215.719 kb on - strand at 4215.744 kb on - strand at 4215.747 kb on - strand at 4215.754 kb on + strand at 4215.755 kb on - strand at 4215.755 kb on - strand at 4215.878 kb on + strand, within ECD_03958 at 4215.879 kb on - strand, within ECD_03958 at 4215.879 kb on - strand, within ECD_03958 at 4215.879 kb on - strand, within ECD_03958 at 4215.972 kb on + strand, within ECD_03958 at 4216.014 kb on - strand, within ECD_03958 at 4216.014 kb on - strand, within ECD_03958 at 4216.014 kb on - strand, within ECD_03958 at 4216.046 kb on + strand, within ECD_03958 at 4216.046 kb on + strand, within ECD_03958 at 4216.046 kb on + strand, within ECD_03958 at 4216.047 kb on - strand, within ECD_03958 at 4216.047 kb on - strand, within ECD_03958 at 4216.105 kb on + strand, within ECD_03958 at 4216.105 kb on + strand, within ECD_03958 at 4216.105 kb on + strand, within ECD_03958 at 4216.138 kb on + strand, within ECD_03958 at 4216.139 kb on - strand, within ECD_03958 at 4216.181 kb on + strand, within ECD_03958 at 4216.182 kb on - strand, within ECD_03958 at 4216.183 kb on + strand, within ECD_03958 at 4216.261 kb on + strand, within ECD_03958 at 4216.497 kb on + strand, within ECD_03958 at 4216.501 kb on - strand, within ECD_03958 at 4216.501 kb on - strand, within ECD_03958 at 4216.580 kb on + strand at 4216.581 kb on - strand at 4216.581 kb on - strand at 4216.636 kb on + strand at 4216.662 kb on - strand at 4216.761 kb on + strand at 4217.006 kb on + strand, within ECD_03959 at 4217.006 kb on + strand, within ECD_03959 at 4217.143 kb on + strand, within ECD_03959 at 4217.143 kb on + strand, within ECD_03959 at 4217.143 kb on + strand, within ECD_03959 at 4217.144 kb on - strand, within ECD_03959 at 4217.144 kb on - strand, within ECD_03959 at 4217.144 kb on - strand, within ECD_03959 at 4217.189 kb on + strand, within ECD_03959 at 4217.189 kb on + strand, within ECD_03959 at 4217.189 kb on + strand, within ECD_03959 at 4217.190 kb on - strand, within ECD_03959 at 4217.190 kb on - strand, within ECD_03959 at 4217.229 kb on - strand, within ECD_03959 at 4217.295 kb on + strand, within ECD_03959 at 4217.315 kb on + strand, within ECD_03959 at 4217.315 kb on + strand, within ECD_03959 at 4217.316 kb on - strand, within ECD_03959 at 4217.316 kb on - strand, within ECD_03959 at 4217.459 kb on + strand, within ECD_03959 at 4217.481 kb on + strand, within ECD_03959 at 4217.481 kb on + strand, within ECD_03959 at 4217.482 kb on - strand, within ECD_03959 at 4217.482 kb on - strand, within ECD_03959 at 4217.484 kb on + strand, within ECD_03959 at 4217.485 kb on - strand, within ECD_03959 at 4217.568 kb on - strand, within ECD_03959 at 4217.568 kb on - strand, within ECD_03959 at 4217.569 kb on + strand, within ECD_03959 at 4217.620 kb on + strand, within ECD_03959 at 4217.620 kb on + strand, within ECD_03959
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 4,214,700 + ECD_03956 0.69 +0.2 4,214,701 - ECD_03956 0.69 +0.1 4,214,741 - ECD_03956 0.74 -1.1 4,214,741 - ECD_03956 0.74 -0.9 4,214,753 - ECD_03956 0.75 +0.7 4,214,758 + ECD_03956 0.75 +1.5 4,214,994 + +0.8 4,215,291 - ECD_03957 0.46 +0.6 4,215,292 + ECD_03957 0.46 +0.9 4,215,292 + ECD_03957 0.46 -2.9 4,215,292 + ECD_03957 0.46 -2.6 4,215,293 - ECD_03957 0.46 +0.3 4,215,293 - ECD_03957 0.46 +0.1 4,215,295 + ECD_03957 0.47 +1.1 4,215,295 + ECD_03957 0.47 -1.4 4,215,295 + ECD_03957 0.47 +0.8 4,215,296 - ECD_03957 0.47 +1.7 4,215,296 - ECD_03957 0.47 -0.4 4,215,296 - ECD_03957 0.47 +0.4 4,215,296 - ECD_03957 0.47 +0.9 4,215,451 + ECD_03957 0.69 -0.9 4,215,452 - ECD_03957 0.69 -0.2 4,215,452 - ECD_03957 0.69 -0.1 4,215,452 - ECD_03957 0.69 +0.6 4,215,519 + ECD_03957 0.79 +0.7 4,215,519 + ECD_03957 0.79 +0.1 4,215,520 - ECD_03957 0.79 +0.4 4,215,584 - ECD_03957 0.88 +0.5 4,215,603 - +0.1 4,215,681 + +0.6 4,215,681 + +0.9 4,215,681 + +0.5 4,215,682 - +0.7 4,215,682 - -0.2 4,215,718 + +0.4 4,215,719 - +0.6 4,215,744 - +0.4 4,215,747 - +0.0 4,215,754 + +0.7 4,215,755 - -0.2 4,215,755 - -0.1 4,215,878 + ECD_03958 0.21 +0.2 4,215,879 - ECD_03958 0.21 +0.6 4,215,879 - ECD_03958 0.21 -0.1 4,215,879 - ECD_03958 0.21 +4.6 4,215,972 + ECD_03958 0.30 +0.7 4,216,014 - ECD_03958 0.34 -3.0 4,216,014 - ECD_03958 0.34 -0.7 4,216,014 - ECD_03958 0.34 +0.2 4,216,046 + ECD_03958 0.38 +0.9 4,216,046 + ECD_03958 0.38 +0.1 4,216,046 + ECD_03958 0.38 -0.4 4,216,047 - ECD_03958 0.38 -1.1 4,216,047 - ECD_03958 0.38 +1.1 4,216,105 + ECD_03958 0.44 +0.7 4,216,105 + ECD_03958 0.44 +0.6 4,216,105 + ECD_03958 0.44 +0.3 4,216,138 + ECD_03958 0.47 -0.2 4,216,139 - ECD_03958 0.47 +0.8 4,216,181 + ECD_03958 0.51 +0.3 4,216,182 - ECD_03958 0.52 +0.4 4,216,183 + ECD_03958 0.52 +0.1 4,216,261 + ECD_03958 0.60 +0.3 4,216,497 + ECD_03958 0.84 -0.9 4,216,501 - ECD_03958 0.84 -0.5 4,216,501 - ECD_03958 0.84 +0.6 4,216,580 + -0.5 4,216,581 - +1.0 4,216,581 - -0.1 4,216,636 + +0.3 4,216,662 - +0.5 4,216,761 + +0.4 4,217,006 + ECD_03959 0.24 +1.7 4,217,006 + ECD_03959 0.24 -0.4 4,217,143 + ECD_03959 0.33 -0.2 4,217,143 + ECD_03959 0.33 -0.8 4,217,143 + ECD_03959 0.33 -1.4 4,217,144 - ECD_03959 0.33 -0.3 4,217,144 - ECD_03959 0.33 -0.1 4,217,144 - ECD_03959 0.33 -0.6 4,217,189 + ECD_03959 0.36 -0.9 4,217,189 + ECD_03959 0.36 +0.5 4,217,189 + ECD_03959 0.36 +0.5 4,217,190 - ECD_03959 0.36 +0.2 4,217,190 - ECD_03959 0.36 +0.1 4,217,229 - ECD_03959 0.39 -0.5 4,217,295 + ECD_03959 0.43 +0.9 4,217,315 + ECD_03959 0.44 +0.2 4,217,315 + ECD_03959 0.44 -0.3 4,217,316 - ECD_03959 0.44 -0.2 4,217,316 - ECD_03959 0.44 -0.6 4,217,459 + ECD_03959 0.54 -1.4 4,217,481 + ECD_03959 0.55 -0.2 4,217,481 + ECD_03959 0.55 +0.4 4,217,482 - ECD_03959 0.55 +1.9 4,217,482 - ECD_03959 0.55 -0.2 4,217,484 + ECD_03959 0.55 -0.1 4,217,485 - ECD_03959 0.55 +5.0 4,217,568 - ECD_03959 0.61 -1.1 4,217,568 - ECD_03959 0.61 +2.3 4,217,569 + ECD_03959 0.61 -0.1 4,217,620 + ECD_03959 0.64 -0.5 4,217,620 + ECD_03959 0.64 -0.6
Or see this region's nucleotide sequence