Strain Fitness in Escherichia coli BL21 around ECD_03641

Experiment: Bas51

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03640 and ECD_03641 are separated by 22 nucleotidesECD_03641 and ECD_r00011 are separated by 480 nucleotides ECD_03640: ECD_03640 - putative multidrug or homocysteine efflux system, at 3,829,432 to 3,830,859 _03640 ECD_03641: ECD_03641 - putative transcriptional regulator, at 3,830,882 to 3,831,574 _03641 ECD_r00011: ECD_r00011 - 16S ribosomal RNA, at 3,832,055 to 3,833,596 _r00011 Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -2 -1 0 1at 3829.894 kb on + strand, within ECD_03640at 3829.895 kb on - strand, within ECD_03640at 3829.923 kb on + strand, within ECD_03640at 3829.924 kb on - strand, within ECD_03640at 3829.933 kb on + strand, within ECD_03640at 3829.933 kb on + strand, within ECD_03640at 3829.934 kb on - strand, within ECD_03640at 3829.953 kb on + strand, within ECD_03640at 3829.953 kb on + strand, within ECD_03640at 3829.954 kb on - strand, within ECD_03640at 3829.954 kb on - strand, within ECD_03640at 3830.008 kb on - strand, within ECD_03640at 3830.102 kb on - strand, within ECD_03640at 3830.136 kb on - strand, within ECD_03640at 3830.209 kb on + strand, within ECD_03640at 3830.210 kb on - strand, within ECD_03640at 3830.304 kb on + strand, within ECD_03640at 3830.304 kb on + strand, within ECD_03640at 3830.304 kb on + strand, within ECD_03640at 3830.304 kb on + strand, within ECD_03640at 3830.304 kb on + strand, within ECD_03640at 3830.305 kb on - strand, within ECD_03640at 3830.305 kb on - strand, within ECD_03640at 3830.305 kb on - strand, within ECD_03640at 3830.335 kb on - strand, within ECD_03640at 3830.339 kb on - strand, within ECD_03640at 3830.339 kb on - strand, within ECD_03640at 3830.347 kb on - strand, within ECD_03640at 3830.470 kb on - strand, within ECD_03640at 3830.477 kb on + strand, within ECD_03640at 3830.488 kb on + strand, within ECD_03640at 3830.489 kb on - strand, within ECD_03640at 3830.572 kb on - strand, within ECD_03640at 3830.638 kb on - strand, within ECD_03640at 3830.674 kb on - strand, within ECD_03640at 3830.694 kb on + strand, within ECD_03640at 3830.695 kb on - strand, within ECD_03640at 3830.695 kb on - strand, within ECD_03640at 3830.697 kb on - strand, within ECD_03640at 3830.737 kb on - strandat 3830.743 kb on - strandat 3830.743 kb on - strandat 3830.887 kb on + strandat 3830.888 kb on - strandat 3830.921 kb on - strandat 3831.002 kb on - strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.015 kb on + strand, within ECD_03641at 3831.016 kb on - strand, within ECD_03641at 3831.082 kb on - strand, within ECD_03641at 3831.082 kb on - strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.085 kb on + strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.086 kb on - strand, within ECD_03641at 3831.143 kb on + strand, within ECD_03641at 3831.169 kb on + strand, within ECD_03641at 3831.215 kb on + strand, within ECD_03641at 3831.215 kb on + strand, within ECD_03641at 3831.241 kb on + strand, within ECD_03641at 3831.241 kb on + strand, within ECD_03641at 3831.242 kb on - strand, within ECD_03641at 3831.242 kb on - strand, within ECD_03641at 3831.248 kb on - strand, within ECD_03641at 3831.484 kb on - strand, within ECD_03641at 3831.484 kb on - strand, within ECD_03641at 3831.529 kb on - strandat 3831.529 kb on - strandat 3831.552 kb on - strandat 3831.566 kb on + strandat 3831.575 kb on + strandat 3831.575 kb on + strandat 3831.575 kb on + strandat 3831.576 kb on - strandat 3831.576 kb on - strandat 3831.579 kb on + strandat 3831.579 kb on + strandat 3831.579 kb on + strandat 3831.579 kb on + strandat 3831.580 kb on - strandat 3831.580 kb on - strandat 3831.597 kb on + strandat 3831.598 kb on - strandat 3831.607 kb on + strandat 3831.607 kb on + strandat 3831.607 kb on + strandat 3831.607 kb on + strandat 3831.608 kb on - strandat 3831.608 kb on - strandat 3831.610 kb on + strandat 3831.611 kb on - strandat 3831.663 kb on - strandat 3831.663 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas51
remove
3,829,894 + ECD_03640 0.32 -0.3
3,829,895 - ECD_03640 0.32 -0.6
3,829,923 + ECD_03640 0.34 -0.7
3,829,924 - ECD_03640 0.34 +0.3
3,829,933 + ECD_03640 0.35 -0.1
3,829,933 + ECD_03640 0.35 +0.4
3,829,934 - ECD_03640 0.35 +0.3
3,829,953 + ECD_03640 0.36 +0.0
3,829,953 + ECD_03640 0.36 +1.3
3,829,954 - ECD_03640 0.37 +0.4
3,829,954 - ECD_03640 0.37 -0.5
3,830,008 - ECD_03640 0.40 +0.6
3,830,102 - ECD_03640 0.47 -0.2
3,830,136 - ECD_03640 0.49 -0.4
3,830,209 + ECD_03640 0.54 +0.4
3,830,210 - ECD_03640 0.54 +0.4
3,830,304 + ECD_03640 0.61 -0.8
3,830,304 + ECD_03640 0.61 +0.2
3,830,304 + ECD_03640 0.61 +0.5
3,830,304 + ECD_03640 0.61 -0.4
3,830,304 + ECD_03640 0.61 +0.3
3,830,305 - ECD_03640 0.61 +0.3
3,830,305 - ECD_03640 0.61 +0.0
3,830,305 - ECD_03640 0.61 -0.3
3,830,335 - ECD_03640 0.63 +0.3
3,830,339 - ECD_03640 0.64 -0.4
3,830,339 - ECD_03640 0.64 +0.6
3,830,347 - ECD_03640 0.64 +0.0
3,830,470 - ECD_03640 0.73 -0.9
3,830,477 + ECD_03640 0.73 -0.3
3,830,488 + ECD_03640 0.74 -0.2
3,830,489 - ECD_03640 0.74 +0.0
3,830,572 - ECD_03640 0.80 -1.2
3,830,638 - ECD_03640 0.84 -0.6
3,830,674 - ECD_03640 0.87 -0.7
3,830,694 + ECD_03640 0.88 -0.7
3,830,695 - ECD_03640 0.88 +0.6
3,830,695 - ECD_03640 0.88 -1.0
3,830,697 - ECD_03640 0.89 +0.1
3,830,737 - -0.8
3,830,743 - -0.6
3,830,743 - -0.4
3,830,887 + +0.1
3,830,888 - -2.0
3,830,921 - -0.8
3,831,002 - ECD_03641 0.17 +0.0
3,831,015 + ECD_03641 0.19 -2.7
3,831,015 + ECD_03641 0.19 +0.5
3,831,015 + ECD_03641 0.19 -0.7
3,831,015 + ECD_03641 0.19 -0.4
3,831,015 + ECD_03641 0.19 -0.6
3,831,015 + ECD_03641 0.19 -0.4
3,831,015 + ECD_03641 0.19 -0.3
3,831,016 - ECD_03641 0.19 +0.0
3,831,082 - ECD_03641 0.29 +1.5
3,831,082 - ECD_03641 0.29 +1.0
3,831,085 + ECD_03641 0.29 -0.1
3,831,085 + ECD_03641 0.29 -0.4
3,831,085 + ECD_03641 0.29 -0.5
3,831,085 + ECD_03641 0.29 -0.6
3,831,086 - ECD_03641 0.29 -1.1
3,831,086 - ECD_03641 0.29 -0.4
3,831,086 - ECD_03641 0.29 -0.4
3,831,086 - ECD_03641 0.29 -1.3
3,831,086 - ECD_03641 0.29 +0.5
3,831,086 - ECD_03641 0.29 +0.9
3,831,086 - ECD_03641 0.29 -1.3
3,831,143 + ECD_03641 0.38 -0.9
3,831,169 + ECD_03641 0.41 -0.6
3,831,215 + ECD_03641 0.48 -0.4
3,831,215 + ECD_03641 0.48 +0.1
3,831,241 + ECD_03641 0.52 -0.4
3,831,241 + ECD_03641 0.52 -0.3
3,831,242 - ECD_03641 0.52 +0.4
3,831,242 - ECD_03641 0.52 +0.4
3,831,248 - ECD_03641 0.53 -2.2
3,831,484 - ECD_03641 0.87 +0.2
3,831,484 - ECD_03641 0.87 -0.6
3,831,529 - -1.2
3,831,529 - +0.4
3,831,552 - +0.0
3,831,566 + -2.0
3,831,575 + +0.8
3,831,575 + -0.2
3,831,575 + +0.2
3,831,576 - -0.8
3,831,576 - +0.5
3,831,579 + -0.1
3,831,579 + -1.0
3,831,579 + +0.5
3,831,579 + -0.3
3,831,580 - -1.8
3,831,580 - -1.0
3,831,597 + -0.6
3,831,598 - +1.2
3,831,607 + +0.2
3,831,607 + +0.0
3,831,607 + +0.0
3,831,607 + -0.2
3,831,608 - -0.3
3,831,608 - -1.8
3,831,610 + -1.2
3,831,611 - -1.0
3,831,663 - +0.1
3,831,663 - -0.8

Or see this region's nucleotide sequence