Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03640 and ECD_03641 are separated by 22 nucleotides ECD_03641 and ECD_r00011 are separated by 480 nucleotides
ECD_03640: ECD_03640 - putative multidrug or homocysteine efflux system, at 3,829,432 to 3,830,859
_03640
ECD_03641: ECD_03641 - putative transcriptional regulator, at 3,830,882 to 3,831,574
_03641
ECD_r00011: ECD_r00011 - 16S ribosomal RNA, at 3,832,055 to 3,833,596
_r00011
Position (kb)
3830
3831
3832 Strain fitness (log2 ratio)
-2
-1
0
1 at 3829.894 kb on + strand, within ECD_03640 at 3829.895 kb on - strand, within ECD_03640 at 3829.923 kb on + strand, within ECD_03640 at 3829.924 kb on - strand, within ECD_03640 at 3829.933 kb on + strand, within ECD_03640 at 3829.933 kb on + strand, within ECD_03640 at 3829.934 kb on - strand, within ECD_03640 at 3829.953 kb on + strand, within ECD_03640 at 3829.953 kb on + strand, within ECD_03640 at 3829.954 kb on - strand, within ECD_03640 at 3829.954 kb on - strand, within ECD_03640 at 3830.008 kb on - strand, within ECD_03640 at 3830.102 kb on - strand, within ECD_03640 at 3830.136 kb on - strand, within ECD_03640 at 3830.209 kb on + strand, within ECD_03640 at 3830.210 kb on - strand, within ECD_03640 at 3830.304 kb on + strand, within ECD_03640 at 3830.304 kb on + strand, within ECD_03640 at 3830.304 kb on + strand, within ECD_03640 at 3830.304 kb on + strand, within ECD_03640 at 3830.304 kb on + strand, within ECD_03640 at 3830.305 kb on - strand, within ECD_03640 at 3830.305 kb on - strand, within ECD_03640 at 3830.305 kb on - strand, within ECD_03640 at 3830.335 kb on - strand, within ECD_03640 at 3830.339 kb on - strand, within ECD_03640 at 3830.339 kb on - strand, within ECD_03640 at 3830.347 kb on - strand, within ECD_03640 at 3830.470 kb on - strand, within ECD_03640 at 3830.477 kb on + strand, within ECD_03640 at 3830.488 kb on + strand, within ECD_03640 at 3830.489 kb on - strand, within ECD_03640 at 3830.572 kb on - strand, within ECD_03640 at 3830.638 kb on - strand, within ECD_03640 at 3830.674 kb on - strand, within ECD_03640 at 3830.694 kb on + strand, within ECD_03640 at 3830.695 kb on - strand, within ECD_03640 at 3830.695 kb on - strand, within ECD_03640 at 3830.697 kb on - strand, within ECD_03640 at 3830.737 kb on - strand at 3830.743 kb on - strand at 3830.743 kb on - strand at 3830.887 kb on + strand at 3830.888 kb on - strand at 3830.921 kb on - strand at 3831.002 kb on - strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.015 kb on + strand, within ECD_03641 at 3831.016 kb on - strand, within ECD_03641 at 3831.082 kb on - strand, within ECD_03641 at 3831.082 kb on - strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.085 kb on + strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.086 kb on - strand, within ECD_03641 at 3831.143 kb on + strand, within ECD_03641 at 3831.169 kb on + strand, within ECD_03641 at 3831.215 kb on + strand, within ECD_03641 at 3831.215 kb on + strand, within ECD_03641 at 3831.241 kb on + strand, within ECD_03641 at 3831.241 kb on + strand, within ECD_03641 at 3831.242 kb on - strand, within ECD_03641 at 3831.242 kb on - strand, within ECD_03641 at 3831.248 kb on - strand, within ECD_03641 at 3831.484 kb on - strand, within ECD_03641 at 3831.484 kb on - strand, within ECD_03641 at 3831.529 kb on - strand at 3831.529 kb on - strand at 3831.552 kb on - strand at 3831.566 kb on + strand at 3831.575 kb on + strand at 3831.575 kb on + strand at 3831.575 kb on + strand at 3831.576 kb on - strand at 3831.576 kb on - strand at 3831.579 kb on + strand at 3831.579 kb on + strand at 3831.579 kb on + strand at 3831.579 kb on + strand at 3831.580 kb on - strand at 3831.580 kb on - strand at 3831.597 kb on + strand at 3831.598 kb on - strand at 3831.607 kb on + strand at 3831.607 kb on + strand at 3831.607 kb on + strand at 3831.607 kb on + strand at 3831.608 kb on - strand at 3831.608 kb on - strand at 3831.610 kb on + strand at 3831.611 kb on - strand at 3831.663 kb on - strand at 3831.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,829,894 + ECD_03640 0.32 -0.3 3,829,895 - ECD_03640 0.32 -0.6 3,829,923 + ECD_03640 0.34 -0.7 3,829,924 - ECD_03640 0.34 +0.3 3,829,933 + ECD_03640 0.35 -0.1 3,829,933 + ECD_03640 0.35 +0.4 3,829,934 - ECD_03640 0.35 +0.3 3,829,953 + ECD_03640 0.36 +0.0 3,829,953 + ECD_03640 0.36 +1.3 3,829,954 - ECD_03640 0.37 +0.4 3,829,954 - ECD_03640 0.37 -0.5 3,830,008 - ECD_03640 0.40 +0.6 3,830,102 - ECD_03640 0.47 -0.2 3,830,136 - ECD_03640 0.49 -0.4 3,830,209 + ECD_03640 0.54 +0.4 3,830,210 - ECD_03640 0.54 +0.4 3,830,304 + ECD_03640 0.61 -0.8 3,830,304 + ECD_03640 0.61 +0.2 3,830,304 + ECD_03640 0.61 +0.5 3,830,304 + ECD_03640 0.61 -0.4 3,830,304 + ECD_03640 0.61 +0.3 3,830,305 - ECD_03640 0.61 +0.3 3,830,305 - ECD_03640 0.61 +0.0 3,830,305 - ECD_03640 0.61 -0.3 3,830,335 - ECD_03640 0.63 +0.3 3,830,339 - ECD_03640 0.64 -0.4 3,830,339 - ECD_03640 0.64 +0.6 3,830,347 - ECD_03640 0.64 +0.0 3,830,470 - ECD_03640 0.73 -0.9 3,830,477 + ECD_03640 0.73 -0.3 3,830,488 + ECD_03640 0.74 -0.2 3,830,489 - ECD_03640 0.74 +0.0 3,830,572 - ECD_03640 0.80 -1.2 3,830,638 - ECD_03640 0.84 -0.6 3,830,674 - ECD_03640 0.87 -0.7 3,830,694 + ECD_03640 0.88 -0.7 3,830,695 - ECD_03640 0.88 +0.6 3,830,695 - ECD_03640 0.88 -1.0 3,830,697 - ECD_03640 0.89 +0.1 3,830,737 - -0.8 3,830,743 - -0.6 3,830,743 - -0.4 3,830,887 + +0.1 3,830,888 - -2.0 3,830,921 - -0.8 3,831,002 - ECD_03641 0.17 +0.0 3,831,015 + ECD_03641 0.19 -2.7 3,831,015 + ECD_03641 0.19 +0.5 3,831,015 + ECD_03641 0.19 -0.7 3,831,015 + ECD_03641 0.19 -0.4 3,831,015 + ECD_03641 0.19 -0.6 3,831,015 + ECD_03641 0.19 -0.4 3,831,015 + ECD_03641 0.19 -0.3 3,831,016 - ECD_03641 0.19 +0.0 3,831,082 - ECD_03641 0.29 +1.5 3,831,082 - ECD_03641 0.29 +1.0 3,831,085 + ECD_03641 0.29 -0.1 3,831,085 + ECD_03641 0.29 -0.4 3,831,085 + ECD_03641 0.29 -0.5 3,831,085 + ECD_03641 0.29 -0.6 3,831,086 - ECD_03641 0.29 -1.1 3,831,086 - ECD_03641 0.29 -0.4 3,831,086 - ECD_03641 0.29 -0.4 3,831,086 - ECD_03641 0.29 -1.3 3,831,086 - ECD_03641 0.29 +0.5 3,831,086 - ECD_03641 0.29 +0.9 3,831,086 - ECD_03641 0.29 -1.3 3,831,143 + ECD_03641 0.38 -0.9 3,831,169 + ECD_03641 0.41 -0.6 3,831,215 + ECD_03641 0.48 -0.4 3,831,215 + ECD_03641 0.48 +0.1 3,831,241 + ECD_03641 0.52 -0.4 3,831,241 + ECD_03641 0.52 -0.3 3,831,242 - ECD_03641 0.52 +0.4 3,831,242 - ECD_03641 0.52 +0.4 3,831,248 - ECD_03641 0.53 -2.2 3,831,484 - ECD_03641 0.87 +0.2 3,831,484 - ECD_03641 0.87 -0.6 3,831,529 - -1.2 3,831,529 - +0.4 3,831,552 - +0.0 3,831,566 + -2.0 3,831,575 + +0.8 3,831,575 + -0.2 3,831,575 + +0.2 3,831,576 - -0.8 3,831,576 - +0.5 3,831,579 + -0.1 3,831,579 + -1.0 3,831,579 + +0.5 3,831,579 + -0.3 3,831,580 - -1.8 3,831,580 - -1.0 3,831,597 + -0.6 3,831,598 - +1.2 3,831,607 + +0.2 3,831,607 + +0.0 3,831,607 + +0.0 3,831,607 + -0.2 3,831,608 - -0.3 3,831,608 - -1.8 3,831,610 + -1.2 3,831,611 - -1.0 3,831,663 - +0.1 3,831,663 - -0.8
Or see this region's nucleotide sequence